Job Description P0C8J8 Confidence 22.32% Date Thu Jan 5 11:30:06 GMT 2012 Rank 120 Aligned Residues 146 % Identity 12% Template c3cyvA_ PDB info PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism Resolution 2.80 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.												.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	I	E	A	A	L	A	F	D	R	N	S	T	R	K	V	L	I	E	A	T	S	N	Q	V	N	Q	F	G	G	Y	T	G	M	T	P	A	D	F	R	E	F	V	F	T	I	A	D	K	V	.	.	.	.	.	.	.	.	.	.	.	G	F	A	R	E	R	I	I	L	G	G	D	H	L	G	P	N	C
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.				.	.												.	.
Template Conservation																											.	.	.	.	.	.	.																																		.	.												.	.
Template Sequence		K	S	V	T	L	Y	L	N	A	Q	I	K	A	G	A	Q	A	V	M	I	F	D	T	W	G	.	.	.	.	.	.	.	G	V	L	T	G	R	D	Y	Q	Q	F	S	L	Y	Y	M	H	K	I	V	D	G	L	L	R	E	N	D	G	R	R	V	P	.	.	V	T	L	F	T	K	G	G	G	Q	W	.	.
Template Known Secondary structure														T	T		S							T	T	G	.	.	.	.	.	.	.	G	G	S									T											S		S			T	T					.	.						T	T	T	T	T	T	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.																																		.	.												.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.								.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.										.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.
Query Sequence		W	Q	Q	E	N	A	D	A	A	M	E	K	S	V	E	L	V	K	E	Y	V	R	A	G	F	S	K	I	H	L	D	A	S	M	S	C	A	G	D	P	I	P	L	A	P	.	.	.	.	.	.	.	.	.	E	T	V	A	E	R	A	A	V	L	C	F	A	A	E	S	V	A	T	D	C	Q	R	E	Q	L
Query Conservation																																															.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	A	M	A	E	T	G	C	D	A	L	G	L	D	W	T	T	D	I	A	D	A	R	R	R	V	G	N	K	V	A	L	Q	G	N	M	D	P	S	M	L	Y	A	P	P	A	R	I	E	E	E	V	A	T	I	L	A	G	F	G	H	G	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S		S						T	T	S										T	T	T	S						B		G	G	G	G	G	S														T	T	T	T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	V	I	G	T	E	V	P	V	P	G	G	E	A	S	A	I	Q	S	V	H	I	T	H	V	E	D	A	A	N	T	L	R	T	H	Q	K	A	F	I	A	R
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.
Template Sequence		G	H	V	F	N	L	G	H	G	I	H	Q	.	.	.	.	.	.	.	.	.	.	D	V	P	P	E	H	A	G	V	F	V	E	A	V	H	R	L	S	E	Q	Y
Template Known Secondary structure					B		B	S	S				T	.	.	.	.	.	.	.	.	.	.	T	S																	G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.											.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions