|   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
C | S | V | C | S | A | H | P | L | V | I | E | A | A | L | A | F | D | R | N | S | T | R | K | V | L | I | E | A | T | S | N | Q | V | N | Q | F | G | G | Y | T | G | M | T | P | A | D | F | R | E | F | V | F | T | I | A | D | K | V | G | F | A | R | E | R | I | I | L | G | G | D | H | L | G | P | N | C | W | Q | Q |
Query Conservation |   |
  |
|
|
|
|
|   |
|   |
|
|   |
|
|
|   |   |
|   |
|   |   |   |
|
|
|
|
|
|
|   |
|
|
|
|   |   |
|
|
|
|
|
|
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
Template Conservation |   |
|
|
|
|
|   |   |   |   |
|   |
|
|
|
|   |   |   | . | . |   |
|   |   |
|
|
|
|
|
|   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |
|   |   |   |   |   | . | . |
|
|   |
|   |   |   |   |   |
| . | . | . | . |   |
|
Template Sequence |   |
C | C | L | D | S | T | N | P | D | A | I | E | A | G | L | K | V | H | . |
. |
R | G | H | A | M | I | N | S | T | S | A | D | Q | W | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
M | D | I | F | F | P | M | A | K | K | Y | E | A | A | . |
. |
I | I | G | L | T | M | N | E | K | G | . |
. |
. |
. |
V | P |
Template Known Secondary structure |   |
 |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |
| . | . |
| S |
|
|  |  |  |  |  |
| S |
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T |
|  | . | . |  |  |  |  | S |
| B | T | T | B | . | . | . | . |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |  |
|
|
|
|
| . | . | . | . |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | |
|
. | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 110 | . | . | . | . | . | . | . | . | . | |
|
120 | . | . | . | . | . | . | . | . | . | |
|
|
|
130 | . |
  |
  |   |
97 | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
|
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | N | A | D | A | A | M | E | K | S | V | E | L | V | K | E | Y | V | R | A | G | F | . |
. |
S | K | I | H | L | D | A | S | M | S | C | A | G | D | P | I | P | L | A | P | E | T | V | A | E | R | A | A | V | L | C | F | A | A | E | S | V | A | T | D | C | Q | R | E | Q | L | S | Y | V | I | G | T |
Query Conservation |   |
|   |   |   |   |
|
|   |   |
|
|   |
|
|   |   |   |
|   |
|
|
| . | . |   |   |
|
|
|
|   |
|
|   |   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|
|
|   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |
|
|
|
|
|
|
|   |   |   |
|   |   |   | . | . | . | . | . | . | . | . |
|   |   |   |   |   |
|
|   |
|
|   |
|   |   |   |   | . |   |   |
|   |   |   |
|   |
|   |
Template Sequence |   |
K | D | A | N | D | R | S | Q | L | A | M | E | L | V | A | N | A | D | A | H | G | I | P | M | T | E | L | Y | I | D | P | L | I | L | P | V | N | V | A | Q | . |
. |
. |
. |
. |
. |
. |
. |
E | H | A | V | E | V | L | E | T | I | R | Q | I | K | L | M | A | . |
N | P | A | P | R | T | V | L | G | L |
Template Known Secondary structure |   |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |  |  |  |  |
|
|
|
|
| T | T | T | S | T | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S | . | S | S |
|
|  |  |  |  |  | G |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
132 | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | |
. | 190 | . | . | . | . | . | . | . | . |
  |