Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 32 Aligned Residues 257 % Identity 30% Template c3ucaB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of isoprenoid synthase (target efi-501974) from2 clostridium perfringens Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T
Query Conservation
Alig confidence																.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		M	N	I	N	S	L	K	E	E	V	D	Q	S	L	.	.	.	.	K	A	Y	F	N	K	D	R	E	Y	N	K	V	L	Y	D	S	M	A	Y	S	I	N	V	G	G	K	R	I	R	P	I	L	M	L	L	S	Y	Y	I	Y	K	S	D	Y	K	K	I	L	T	P	A	M	A	I	E	M	I	H	T	Y	S
Template Known Secondary structure																.	.	.	.				T					S	S														S																T	T		S		G	G	G	G
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.					.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		81	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure								.	.																																												.	.	.	.	.	.										.	.
Query SS confidence								.	.																																												.	.	.	.	.	.										.	.
Query Sequence		L	L	H	D	D	V	.	.	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	.	.	.	.	.	.	K	V	L	E	V	M	S	E	A	.	.	V	N	V	I	A	E	G	E	V	L	Q	L
Query Conservation								.	.																																												.	.	.	.	.	.										.	.
Alig confidence								.	.																																												.	.	.	.	.	.										.	.
Template Conservation
Template Sequence		L	I	H	D	D	L	P	C	M	D	N	D	D	L	R	R	G	K	P	T	N	H	K	V	F	G	E	A	I	A	V	L	A	G	D	A	L	L	N	E	A	M	K	I	L	V	D	Y	S	L	E	E	G	K	S	A	L	K	A	T	K	I	I	A	D	A	A	G	S	D	G	M	I	G	G	Q	I	V	D	I
Template Known Secondary structure						T	S	T	T	T	T			S			T	T																																																			S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D
Query Conservation
Alig confidence						.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	N	E	D	.	.	.	.	S	L	K	E	L	D	Y	M	H	L	K	K	T	G	E	L	I	K	A	S	I	M	S	G	A	V	L	A	E	A	S	E	G	D	I	K	K	L	E	G	F	G	Y	K	L	G	L	A	F	Q	I	K	D	D	I	L	D	V	V	N	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T		.	.	.	.													T															T	T																																.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		168	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A
Query Conservation
Alig confidence		.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation		.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Sequence		.	.	.	.	.	.	N	Y	I	T	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	E	C	K	K	K	C	V	N	I	T	E	E	C	I	E	I	L	S	S	I	K	G	N	T	.	.	E	P
Template Known Secondary structure		.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						T	S	S	S			.	.
Template Predicted Secondary structure		.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template SS confidence
								254	.	.	.	.	.																																						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.
		311	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	L	A	H	I	A	V	Q	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	V	L	T	M	K	L	L	E	R	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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