Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 26 Aligned Residues 269 % Identity 30% Template c3ts7B_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of farnesyl diphosphate synthase (target efi-501951)2 from methylococcus capsulatus Resolution 1.94 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	.	.	.	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence		R	S	L	S	D	F	M	R	S	S	Q	E	R	V	E	R	A	L	D	A	R	L	P	A	A	D	R	M	P	E	R	L	H	Q	A	M	R	Y	S	V	L	G	G	G	K	R	M	R	P	L	L	T	Y	A	T	G	Q	T	I	G	V	A	A	D	L	L	D	G	P	A	C	A	V	E	F	I	H	V	Y	S
Template Known Secondary structure																							S			T	T	S	S	S												S	S																		T			G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		81	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.									.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.																																											.	.	.	.	.	.	.	.												.	.
Query SS confidence								.	.																																											.	.	.	.	.	.	.	.												.	.
Query Sequence		L	L	H	D	D	V	.	.	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	.	.	.	.	.	.	.	.	L	K	V	L	E	V	M	S	E	A	V	.	.	N	V	I	A	E	G	E	V	L
Query Conservation								.	.																																											.	.	.	.	.	.	.	.												.	.
Alig confidence								.	.																																											.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		L	I	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	K	P	T	C	H	K	A	Y	D	E	A	T	A	I	L	A	G	D	G	L	Q	A	L	A	F	H	V	L	A	Q	D	P	S	I	A	V	P	A	E	N	R	I	A	M	I	E	T	L	A	K	A	S	G	P	A	G	M	V	G	G	Q	A	I
Template Known Secondary structure						T	S	T	T	T	T			S	B	S	S	S	S	B						S																								T	T																				S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		Q	L	M	N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	.	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V
Query Conservation																																							.
Alig confidence									.																														.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	A	S	V	G	K	.	K	L	D	L	P	G	L	E	N	M	H	I	R	K	T	G	A	L	I	R	A	S	V	R	L	A	C	L	A	R	P	G	L	P	A	E	Q	F	D	R	L	D	H	Y	A	K	C	I	G	L	A	F	Q	I	Q	D	D	I	L	D	E	E	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	T	T		.															T														T	S	T	T																															.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.																																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W
Query Conservation
Alig confidence		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Sequence		.	S	D	T	Q	T	L	K	P	N	Y	P	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S	G	A	K	E	K	A	E	E	M	H	E	A	A	L	E	S	L	A	G	F	G	.	.	P	E
Template Known Secondary structure		.			T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				G	G	G			.	.	G	G
Template Predicted Secondary structure		.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template SS confidence
			234	.	.	.	.	.	240	.	.	.	.	.	.	.																																						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	A	L	I	G	L	A	H	I	A	V	Q	R	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	L	L	R	E	L	A	R	F	I	I	Q	R	Q	S
Template Known Secondary structure		G												T	T
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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