Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 25 Aligned Residues 286 % Identity 28% Template c3tc1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:octaprenyl pyrophosphate synthase; PDBTitle: crystal structure of octaprenyl pyrophosphate synthase from2 helicobacter pylori Resolution 2.00 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	.	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D	D	V	V	D	E
Query Conservation																		.
Alig confidence																		.																																																													.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		E	K	Q	L	K	A	I	Q	N	K	I	A	S	W	I	K	E	I	E	S	G	F	I	D	E	L	F	S	K	I	G	P	S	K	M	L	R	S	K	L	M	L	A	L	L	N	E	K	T	D	A	I	L	L	D	K	A	L	N	L	C	T	I	V	E	M	I	Q	T	A	S	L	L	H	D	D	V	.	.	.
Template Known Secondary structure																		T	T										T	T														T	T			T	T																													T	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E	V	L	Q	L	M	N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	N	F	N	A	V	M	L	G	D	V	F	Y	S	K	A	F	F	E	L	S	K	M	G	E	.	L	I	A	Q	A	L	S	N	A	V	L	R	L	S	R	G	E	I	E	D	V	F	V	G	E	C	F	N	S	D	K	Q	K	Y	W	R	I	L	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.				S																		T	T	S			.																								T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
															80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P
Query Conservation
Alig confidence																							.	.	.
Template Conservation																							.	.	.
Template Sequence		K	T	A	H	F	I	E	A	S	L	K	S	M	A	I	L	L	N	K	D	A	.	.	.	K	I	Y	A	D	F	G	L	N	F	G	M	A	F	Q	I	I	D	D	L	L	D	I	T	Q	D	A	K	T	L	G	K	P	N	F	S	D	F	K	E	G	K	T	T	L	P	Y	L	L	L	Y	E	K	L	N	Q
Template Known Secondary structure			T															T	T	S			.	.	.																						T	T	S			T	T									T	G	G	G	T											T	T	S
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q	R
Query Conservation
Alig confidence															.																																					.	.	.	.
Template Conservation															.																																					.	.	.	.
Template Sequence		H	D	Q	G	L	L	I	S	Y	F	K	Q	D	.	S	H	E	I	I	E	W	T	K	E	K	F	K	Q	Y	G	I	I	E	E	T	L	K	T	A	Q	V	Y	S	K	K	A	L	E	A	I	.	.	.	.	K	G	E	N	N	L	I	L	E	K	L	A	Q	D	V	I	S	R
Template Known Secondary structure										T	T	T			.															T	T																				T	.	.	.	.	T	T	T
Template Predicted Secondary structure															.																																					.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions