Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 41 Aligned Residues 237 % Identity 16% Template c3qkcB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranyl diphosphate synthase small subunit; PDBTitle: crystal structure of geranyl diphosphate synthase small subunit from2 antirrhinum majus Resolution 2.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	L	.	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		L	T	R	T	Q	T	Y	R	A	T	I	E	S	D	I	E	S	Y	L	K	K	A	I	P	I	R	A	P	E	S	V	F	E	P	M	H	H	L	T	F	A	A	P	R	T	S	A	S	A	L	C	V	A	A	C	E	L	V	G	G	D	R	S	D	A	M	A	A	A	A	A	V	H	L	M	H	V	A	A	Y
Template Known Secondary structure																								S					S	S	T	T											S																T	T			G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.										130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.
Query Sequence		L	H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	.	.	.	.	.	.	.	.	.	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E	V	L	Q	L	M	N
Query Conservation																																																		.	.	.	.	.	.	.	.	.
Alig confidence																			.																															.	.	.	.	.	.	.	.	.
Template Conservation																			.
Template Sequence		T	H	E	N	L	P	L	T	D	G	P	M	S	K	S	E	I	.	Q	H	K	F	D	P	N	I	E	L	L	T	G	D	G	I	I	P	F	G	L	E	L	M	A	R	S	M	D	P	T	R	N	N	P	D	R	I	L	R	A	I	I	E	L	T	R	V	M	G	S	E	G	I	V	E	G	Q	Y	H	E	L
Template Known Secondary structure					S			B	T	T	B		S	S	S	S			.			S	S																								S		S	S																			T	T	T	T									T
Template Predicted Secondary structure																			.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.					.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	.	.	.	.	A	D	G	E	Q	L	G	K	N	V	G
Query Conservation																																																																			.	.	.	.
Alig confidence																																																																			.	.	.	.
Template Conservation
Template Sequence		G	L	N	Q	L	N	D	L	E	L	I	E	Y	V	C	K	K	K	E	G	T	L	H	A	C	G	A	A	C	G	A	I	L	G	G	C	D	E	D	K	I	E	K	L	R	R	F	G	L	Y	V	G	T	V	Q	G	L	L	G	K	N	R	S	G	F	E	G	R	I	K	E	L	K	E	L	A	V	K	E	L
Template Known Secondary structure		T			S	S													T																																									T	T			S	T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		229	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	L	N	E	G	K	P	T	L	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	F	G	G	E	K	I	E	L	I	R
Template Known Secondary structure		T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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