Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 44 Aligned Residues 253 % Identity 28% Template c3p8rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: crystal structure of polyprenyl synthase from vibrio cholerae Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L
Query Conservation
Alig confidence																															.
Template Conservation																															.
Template Sequence		S	L	E	A	L	S	S	Y	Q	Q	R	N	N	Q	Q	L	D	Q	W	L	N	R	I	P	F	Q	T	L	P	.	L	I	E	A	M	R	Y	G	L	L	L	G	G	K	R	A	R	P	Y	L	V	Y	I	T	G	Q	M	L	G	C	E	L	S	D	L	D	T	P	A	S	A	V	E	C	I	H	A	Y	S	L
Template Known Secondary structure		T	T	T																			T		S		T	T	S	S	.											S			S													T	T	T			G	G	G	T
Template Predicted Secondary structure																															.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.									130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.										.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.										.	.
Query Sequence		L	H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	.	.	.	.	.	.	.	.	K	V	L	E	V	M	S	E	A	.	.	V	N	V	I	A	E	G	E	V	L	Q	L	M
Query Conservation																																																		.	.	.	.	.	.	.	.										.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.										.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	H	D	D	L	P	A	M	D	.	.	.	.	.	.	.	.	.	.	.	.	D	D	E	A	T	A	I	L	T	G	D	A	L	Q	T	L	A	F	T	I	L	A	E	G	D	L	S	A	A	G	E	T	Q	R	V	A	M	L	Q	A	L	A	E	A	S	G	A	Q	G	M	C	L	G	Q	A	L	D	L	A
Template Known Secondary structure					T						.	.	.	.	.	.	.	.	.	.	.	.																								S								T	T													S	T	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.													.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	.	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D
Query Conservation																																										.
Alig confidence				.																																						.																																						.	.
Template Conservation				.																																																																												.	.
Template Sequence		A	E	.	N	R	L	I	S	L	E	E	L	E	T	I	H	R	N	K	T	G	A	L	M	R	C	A	I	R	L	G	A	L	A	A	G	E	K	G	R	A	M	L	P	H	L	D	R	Y	A	E	A	V	G	L	A	F	Q	V	Q	D	D	I	L	D	I	I	S	D	K	S	T	Y	P	A	L	L	G	.	.
Template Known Secondary structure		T	T	.	T	S															T														T	T	T					T	T																									T	T											.	.
Template Predicted Secondary structure				.																																																																												.	.
Template SS confidence
		162	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	G	A	Q	Q	K	A	H	T	L	L	Q	E	A	L	L	A	L	E	A	I	P	Y	N	T	.	.	E	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T		S	S		T	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template SS confidence
																																																				254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.
		311	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	L	A	H	I	A	V	Q	R	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	E	F	A	R	Y	V	V	E	R	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions