Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 8 Aligned Residues 300 % Identity 27% Template c3n3dB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase from2 lactobacillus brevis atcc 367 Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	.	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D	D	V	V	D
Query Conservation																																																						.
Alig confidence																																																						.
Template Conservation
Template Sequence		V	E	P	Q	L	T	A	L	Q	D	Y	L	L	R	T	V	Q	L	D	N	Q	P	I	H	H	K	I	L	A	L	L	K	S	G	G	K	L	L	R	P	G	Y	F	Y	L	F	S	T	F	G	N	A	A	T	P	A	Q	L	Q	A	G	A	A	A	I	E	I	L	H	V	G	T	L	I	H	D	D	V	I	D
Template Known Secondary structure		S															T			S														S		T	T												T	T				S																								T	S
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	.	M	T	S	L	G	S	L	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E	V	L	Q	L	M	N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I
Query Conservation																																				.
Alig confidence			.	.	.	.	.	.	.	.	.	.																								.
Template Conservation			.	.	.	.	.	.	.	.	.	.
Template Sequence		D	.	.	.	.	.	.	.	.	.	.	Q	M	T	Y	G	Q	R	N	A	I	Y	A	G	D	F	M	F	T	V	Y	F	D	Q	V	L	K	S	T	T	D	R	S	L	I	Q	N	H	I	D	A	M	H	R	I	L	Q	G	E	L	H	Q	M	D	L	N	Y	R	E	D	I	T	L	D	A	Y	L	N	E	I
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.																																																			G	G	G	G	T	T		S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92											.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	K	T	A	E	L	F	A	L	S	C	Y	Q	G	A	Q	L	A	G	A	P	Q	S	V	I	D	R	T	R	D	I	G	I	A	I	G	C	A	Y	Q	M	L	D	D	I	L	D	Y	A	G	D	P	K	R	T	Q	K	P	V	L	E	D	L	R	S	G	V	Y	S	L	P	L	L	L	S	L	S	H	A
Template Known Secondary structure					T																T																											T	T	S	S	S		S	S	S												T								T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q	R
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		P	R	D	F	H	K	L	L	K	K	K	Q	A	.	.	M	T	L	E	D	I	K	H	V	Q	A	L	V	A	Q	Y	D	G	V	G	A	A	K	Q	L	A	Q	D	Y	T	D	R	A	L	T	L	I	Q	Q	L	P	V	G	S	A	Q	Q	S	L	E	Q	L	T	R	L	L	L	R	R
Template Known Secondary structure										T	T	G	G	G	.	.			T	T												T	T																						T	S		S	S															T
Template Predicted Secondary structure															.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions