Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 2 Aligned Residues 321 % Identity 46% Template c3mzvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:decaprenyl diphosphate synthase; PDBTitle: crystal structure of a decaprenyl diphosphate synthase from2 rhodobacter capsulatus Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	.	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		H	D	R	L	A	Q	A	L	A	E	D	M	A	A	V	N	A	L	I	R	E	R	M	S	S	E	H	A	P	R	I	P	E	V	T	A	H	L	I	E	A	G	G	K	R	L	R	P	M	L	T	L	A	A	A	R	L	V	G	Y	G	G	P	F	H	V	H	L	A	A	T	V	E	F	I	H	T	A	T	L
Template Known Secondary structure									T															T			S	S		T											S	S																	T	T				S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E	V	L	Q	L	M	N	V	N	D	P	D	I	T	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	D	D	V	V	D	E	S	R	Q	R	R	G	R	P	T	A	N	L	L	W	D	N	K	S	S	V	L	V	G	D	Y	L	F	A	R	S	F	Q	L	M	T	D	T	G	N	M	R	V	M	E	I	L	A	N	A	S	A	V	I	A	E	G	E	V	L	Q	L	T	A	A	Q	N	L	A	T	T	E	D
Template Known Secondary structure								T	T		S			T	T								S																						T	T																											T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Y	L	R	V	I	R	G	K	T	A	A	L	F	S	A	A	T	E	V	G	G	I	I	G	G	A	P	E	D	Q	V	Q	A	L	F	D	Y	G	D	A	L	G	I	A	F	Q	I	V	D	D	L	L	D	Y	G	G	K	S	A	E	I	G	K	N	T	G	D	D	F	R	E	R	K	L	T	M	P	V	I
Template Known Secondary structure											T															T	T																													T	T	T	T	T	T				T	T		S					T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	.	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q
Query Conservation																							.
Alig confidence																							.
Template Conservation
Template Sequence		K	A	V	A	L	A	D	E	A	E	R	A	F	W	K	R	V	I	E	K	G	D	Q	Q	D	G	D	L	E	H	A	M	A	L	M	T	K	H	G	T	L	E	A	T	R	L	A	A	I	G	W	T	D	T	A	R	K	A	L	A	K	L	P	D	H	P	L	R	Q	M	L	D	D	L	A	D	Y	V	V	E
Template Known Secondary structure						T													T	T	T					T	T												T	T																				G	G	G	S																	T	G
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		321	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	R
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		331	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions