Phyre 2 alignment of P0AD57 with c3m9uD

Job Description P0AD57
Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012

Rank 24 Aligned Residues 269

% Identity 27% Template c3m9uD_

PDB info PDB header:transferase Chain: D: PDB Molecule:farnesyl-diphosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from lactobacillus brevis atcc 367

Resolution 1.77 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																																						.	.
Query SS confidence																							.	.																																						.	.
Query Sequence	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	.	.	N	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	.	.	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A
Query Conservation																							.	.																																						.	.
Alig confidence																							.	.																																						.	.
Template Conservation
Template Sequence	A	R	L	I	A	F	E	D	Q	W	V	P	A	L	N	A	P	L	K	Q	A	I	L	A	D	S	Q	D	A	Q	L	A	A	A	M	T	Y	S	V	L	A	G	G	K	R	L	R	P	L	L	T	V	A	T	M	Q	S	L	G	V	T	F	V	P	E	R	H	W	R	P	V	M	A	L	E	L	L	H	T	Y
Template Known Secondary structure																T	T								T		S													T	S																	T	T
Template Predicted Secondary structure
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure								.	.																																												.	.	.	.	.											.	.
Query SS confidence								.	.																																												.	.	.	.	.											.	.
Query Sequence	T	L	L	H	D	D	V	.	.	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	.	.	.	.	.	K	V	L	E	V	M	S	E	A	V	.	.	N	V	I	A	E	G	E	V	L	Q	L
Query Conservation								.	.																																												.	.	.	.	.											.	.
Alig confidence								.	.																																												.	.	.	.	.											.	.
Template Conservation
Template Sequence	S	L	I	H	D	D	L	P	A	M	D	N	D	A	L	R	R	G	E	P	T	N	H	V	K	F	G	A	G	M	A	T	L	A	G	D	G	L	L	T	L	A	F	Q	W	L	T	A	T	D	L	P	A	T	M	Q	A	A	L	V	Q	A	L	A	T	A	A	G	P	S	G	M	V	A	G	Q	A	K	D	I
Template Known Secondary structure							S	T	T	T	T			S			T	T																													T	S	S	S																		S	T	T	T
Template Predicted Secondary structure
Template SS confidence
	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

	151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence	M	N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D
Query Conservation
Alig confidence				.																																																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																																																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	S	E	.	H	V	N	L	P	L	S	Q	L	R	V	L	H	K	E	K	T	G	A	L	L	H	Y	A	V	Q	A	G	L	I	L	G	Q	A	P	E	A	Q	W	P	A	Y	L	Q	F	A	D	A	F	G	L	A	F	Q	I	Y	D	D	I	L	D	V	V	S	.	.	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure		T	T	.	T																T															T	T			G	G	G																											.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.																																																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	165	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.												.

	231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	A	E	A	K	N	T	Y	P	G	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	I	G	A	N	Q	A	L	I	D	T	I	H	S	G	Q	A	A	L	Q	G	L	P	T	S	T	Q	R	D	D
Template Known Secondary structure					T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T	T	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	233	.	.	.	.	.	.	240	.	.	.	.																																						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

	311	.	.	.	.	.	.	.		.	320	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence	L	I	G	L	A	H	I	A	.	V	Q	R
Query Conservation									.
Alig confidence									.
Template Conservation
Template Sequence	L	A	A	F	F	S	Y	F	D	T	E	R
Template Known Secondary structure			G	G	G	G	G	S		T	T
Template Predicted Secondary structure
Template SS confidence
	287	.	.	290	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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