Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 38 Aligned Residues 255 % Identity 31% Template c3m0gB_ PDB info PDB header:transferase Chain: B: PDB Molecule:farnesyl diphosphate synthase; PDBTitle: crystal structure of putative farnesyl diphosphate synthase from2 rhodobacter capsulatus Resolution 1.90 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	.	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D
Query Conservation																										.
Alig confidence																										.												.
Template Conservation																																						.
Template Sequence		L	S	E	R	L	K	E	V	Q	D	A	V	E	T	A	X	A	A	A	I	G	R	L	P	A	G	D	L	R	D	A	X	A	Y	A	A	.	Q	G	G	K	R	L	R	A	F	L	A	I	E	S	A	A	I	H	G	I	S	X	A	Q	A	X	P	A	A	L	A	V	E	A	L	H	A	Y	S	L	V	H	D
Template Known Secondary structure																							T	S			S										T	.	S		S															T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		85			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.							.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure			.	.																																												.	.	.	.	.	.															.	.
Query SS confidence			.	.																																												.	.	.	.	.	.															.	.
Query Sequence		D	.	.	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	.	.	.	.	.	.	L	K	V	L	E	V	M	S	E	A	V	N	V	I	.	.	A	E	G	E	V	L	Q	L	M	N	V	N
Query Conservation			.	.																																												.	.	.	.	.	.															.	.
Alig confidence			.	.																																												.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		D	X	P	C	X	D	N	D	D	L	R	R	G	L	P	T	V	H	K	K	W	D	D	A	T	A	V	L	A	G	D	A	L	Q	T	L	A	F	E	L	C	T	D	P	V	L	G	S	A	E	N	R	V	A	L	V	A	A	L	A	Q	A	S	G	A	E	G	X	V	Y	G	Q	A	L	D	I	A	A	E	T
Template Known Secondary structure		T	S	T	T	T	T			S			T	T								S																				T	T		G	G	G																		S	T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
			155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E
Query Conservation		.
Alig confidence		.																																					.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	V	P	L	T	L	D	E	I	I	R	L	Q	A	G	K	T	G	A	L	I	S	F	A	A	Q	A	G	A	I	L	A	G	A	D	R	.	.	.	G	P	L	T	A	Y	A	T	A	L	G	L	A	F	Q	I	A	D	D	I	L	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S															T																T				.	.	.																						T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A	L	I	G
Query Conservation
Alig confidence		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Sequence		.	K	A	T	F	V	S	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	A	G	A	K	S	R	A	A	D	L	V	A	E	A	E	A	A	L	A	P	Y	G	.	.	E	A	A	S	T	L	R	A
Template Known Secondary structure		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T	G	G	G	G	.	.	G	G	G
Template Predicted Secondary structure		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template SS confidence
			240	.	.	.	.	.	.	.																																						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	H	I	A	V	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	A	R	Y	V	I	E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions