Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 11 Aligned Residues 297 % Identity 31% Template c3lmdA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum atcc 13032 Resolution 1.90 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	.	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L	L
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		P	E	L	T	A	R	I	N	D	A	M	V	Q	V	E	E	L	L	H	T	E	L	S	S	G	E	D	F	L	V	D	I	V	M	H	L	T	R	A	G	G	K	R	F	R	P	M	F	A	L	L	A	S	E	F	G	E	K	P	L	S	E	N	V	I	K	A	A	V	V	V	E	I	T	H	L	A	T	L	Y
Template Known Secondary structure																								T		S																S													T	T	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E	V	L	Q	L	M	N	V	N	D	P	D	I	T	E	E	N
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																												.																															.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.																												.																															.
Template Sequence		H	D	D	V	M	D	.	.	.	.	.	.	.	.	.	.	.	N	A	R	W	D	N	S	V	A	I	L	A	G	D	I	L	L	A	H	A	S	G	L	M	S	Q	L	.	G	T	D	T	V	A	H	F	A	E	T	F	G	E	L	V	T	G	Q	M	R	E	T	V	G	P	R	D	T	D	.	P	I	E	H
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.																												.																											T	T	S		.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																												.																															.
Template SS confidence
		112	.	.	.	.	.												.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.
Template Sequence		Y	T	N	V	I	R	E	K	T	G	V	L	I	A	S	A	G	Y	L	G	A	M	H	A	G	A	A	P	E	H	I	D	A	L	K	N	F	G	A	A	V	G	M	I	F	Q	I	V	D	D	I	I	D	I	F	S	P	G	.	.	.	.	.	.	.	.	T	D	L	R	E	G	V	F	T	L	P	V	L	Y
Template Known Secondary structure										T															T	T																																		.	.	.	.	.	.	.	.						T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.									.	.	250	.	.	.	.	.	.	.	.	.	260	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	R	E	D	T	P	V	G	A	E	L	R	D	I	L	T	G	P	L	E	D	D	E	T	V	N	H	V	L	E	L	L	S	Q	S	G	G	R	Q	A	A	L	D	E	V	Y	R	Y	M	D	I	A	N	A	E	L	D	R	L	P	D	S	T	V	K	E	A	L	R	N	L	A	T	F	T	V	K	R
Template Known Secondary structure							S											S	S				S														S	S																					T	T	S			S																T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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