Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 37 Aligned Residues 263 % Identity 25% Template c3llwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase (ispa); PDBTitle: crystal structure of geranyltransferase from helicobacter2 pylori 26695 Resolution 2.30 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.							.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																								.	.	.																																				.	.	.	.	.	.
Query SS confidence																								.	.	.																																				.	.	.	.	.	.
Query Sequence		K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	.	.	.	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	.	.	.	.	.	.	E	G	N	A	H	V	T	I	A	A	L	I	E	F
Query Conservation																								.	.	.																																				.	.	.	.	.	.
Alig confidence																								.	.	.																																				.	.	.	.	.	.
Template Conservation
Template Sequence		P	N	L	S	F	Y	Y	N	E	C	E	R	F	E	S	F	L	K	N	H	H	L	H	L	E	S	F	H	P	Y	L	E	K	A	F	F	E	M	V	L	N	G	G	K	R	F	R	P	K	L	F	L	A	V	L	C	A	L	V	G	Q	K	D	Y	S	N	Q	Q	T	E	Y	F	K	I	A	L	S	I	E	C
Template Known Secondary structure																				T							S	S		S	S											S																		S								S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		76	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.
Predicted Secondary structure													.	.																																											.	.	.	.	.											.	.
Query SS confidence													.	.																																											.	.	.	.	.											.	.
Query Sequence		I	H	T	A	T	L	L	H	D	D	V	.	.	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	.	.	.	.	.	L	K	V	L	E	V	M	S	E	A	.	.	V	N	V	I	A	E	G	E
Query Conservation													.	.																																											.	.	.	.	.											.	.
Alig confidence													.	.																																											.	.	.	.	.											.	.
Template Conservation
Template Sequence		L	H	T	Y	S	L	I	H	D	D	L	P	C	M	D	N	A	A	L	R	R	N	H	P	T	L	H	A	K	Y	D	E	T	T	A	V	L	I	G	D	A	L	N	T	Y	S	F	E	L	L	S	N	A	L	L	E	S	H	I	I	V	E	L	I	K	I	L	S	A	N	G	G	I	K	G	M	I	L	G	Q
Template Known Secondary structure											T	S	T	T	T	T			S			T	T								T																							S		S																	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		V	L	Q	L	M	N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	.	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K
Query Conservation																																												.
Alig confidence									.																																			.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	D	C	Y	F	E	.	N	T	P	L	N	L	E	Q	L	T	F	L	H	E	H	K	T	A	K	L	I	S	A	S	L	I	M	G	L	V	A	S	G	I	K	D	E	E	L	F	K	W	L	Q	A	F	G	L	K	M	G	L	C	F	Q	V	L	D	D	I	I	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	.	T	S															T																																													.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.																																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T
Query Conservation
Alig confidence		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	D	V	T	Q	A	K	N	S	F	V	N	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	R	A	N	N	Y	A	Q	T	L	K	T	E	V	L	N	D	L	D	A	L	K	P	A
Template Known Secondary structure		.	.	.	.							S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					T	T	S	T	T	T
Template Predicted Secondary structure		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						232	.	.	.	.	.	.	.	240	.	.	.	.																																						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		306	.			.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		P	W	.	.	R	E	A	L	I	G	L	A	H	I	A	V	Q
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		Y	P	L	L	Q	E	N	L	N	A	L	L	N	T	L	F	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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