Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 22 Aligned Residues 307 % Identity 26% Template c3lk5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl pyrophosphate synthase; PDBTitle: crystal structure of putative geranylgeranyl pyrophosphate synthase2 from corynebacterium glutamicum Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.							.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																															.	.	.																																	.	.	.	.	.	.
Query SS confidence																															.	.	.																																	.	.	.	.	.	.
Query Sequence		M	N	L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	.	.	.	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	.	.	.	.	.	.	E	G	N	A	H	V	T	I	A	A
Query Conservation																															.	.	.																																	.	.	.	.	.	.
Alig confidence																															.	.	.																																	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	L	D	K	F	P	E	V	V	R	D	R	L	T	Q	F	L	D	A	Q	E	L	T	I	A	D	I	G	A	P	V	T	D	A	V	A	H	L	R	S	F	V	L	N	G	G	K	R	I	R	P	L	Y	A	W	A	G	F	L	A	A	Q	G	H	K	N	S	S	E	K	L	E	S	V	L	D	A	A	A
Template Known Secondary structure				T	T	T																																								S																			T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		L	I	E	F	I	H	T	A	T	L	L	H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	K	.	.	.	.	.	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E
Query Conservation																																																													.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	E	F	I	Q	A	C	A	L	I	H	D	D	I	I	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	V	S	V	S	I	L	A	G	D	X	A	L	V	W	A	E	D	X	L	Q	D	S	G	L	S	A	E	A	L	A	R	T	R	D	A	W	R	G	X	R	T	E	V	I	G	G	Q
Template Known Secondary structure																		T		.	.	.	.	.	.	.	.	.	.	.	.	.																							T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.														.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		V	L	Q	L	M	N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	.	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		L	L	D	I	Y	L	E	S	H	A	N	E	S	V	E	L	A	D	S	V	N	R	F	K	T	A	A	Y	T	I	A	R	P	L	H	L	G	A	S	I	A	G	G	S	P	Q	L	I	D	A	L	L	H	Y	G	H	D	I	G	I	A	F	Q	L	R	D	D	L	L	G	V	F	G	D	P	A	I	T	G	K
Template Known Secondary structure										T	T															T					T											T	T																															S						S	S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	.	.	.	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.
Template Conservation
Template Sequence		P	A	G	D	D	I	R	E	G	K	R	T	V	L	L	A	L	A	L	Q	R	A	D	K	Q	S	P	E	A	A	T	A	I	R	A	G	V	G	K	V	T	S	P	E	D	I	A	V	I	T	E	H	I	R	A	T	G	A	E	E	E	V	E	Q	R	I	S	Q	L	T	E	S	G	L	A	H	L	D	D	V
Template Known Secondary structure			T	T					T	T																												T	T	T			S														T	T																				G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		303		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		P	.	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		D	I	P	D	E	V	R	A	Q	L	R	A	L	A	I	R	S	T	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions