Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 43 Aligned Residues 226 % Identity 20% Template c3kraB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranyl diphosphate synthase small subunit; PDBTitle: mint heterotetrameric geranyl pyrophosphate synthase in2 complex with magnesium Resolution 1.90 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	L	.	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		M	Q	P	Y	W	A	A	I	E	A	D	I	E	R	Y	L	K	K	S	I	T	I	R	P	P	E	T	V	F	G	P	M	H	H	L	T	F	A	A	P	A	T	A	A	S	T	L	C	L	A	A	C	E	L	V	G	G	D	R	S	Q	A	M	A	A	A	A	A	I	H	L	V	H	A	A	A	Y	V	H	E
Template Known Secondary structure																									S	S														S																T	T			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.
Predicted Secondary structure				.																																											.	.	.	.	.	.	.															.	.	.	.	.
Query SS confidence				.																																											.	.	.	.	.	.	.															.	.	.	.	.
Query Sequence		D	V	.	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	.	.	.	.	.	.	.	L	K	V	L	E	V	M	S	E	A	V	N	V	I	.	.	.	.	.	A	E	G	E	V	L	Q	L	M
Query Conservation				.																																											.	.	.	.	.	.	.															.	.	.	.	.
Alig confidence				.																																											.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation
Template Sequence		H	L	P	L	T	D	G	S	R	P	V	S	K	P	A	I	Q	H	K	Y	G	P	N	V	E	L	L	T	G	D	G	I	V	P	F	G	F	E	L	L	A	G	S	V	D	P	A	R	T	D	D	P	D	R	I	L	R	V	I	I	E	I	S	R	A	G	G	P	E	G	M	I	S	G	L	H	R	E	E	E
Template Known Secondary structure		T				S	S	S	S	S				S	S					S	S																							T			T	T		T	T																T	S	T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.										.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.																.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.																.	.
Query Sequence		N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	.	.	.	.	.	.	.	.	.	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	.	.
Query Conservation																																																								.	.	.	.	.	.	.	.	.																.	.
Alig confidence							.																																																	.	.	.	.	.	.	.	.	.																.	.
Template Conservation							.
Template Sequence		I	V	D	G	N	.	T	S	L	D	F	I	E	Y	V	C	K	K	K	Y	G	E	M	H	A	C	G	A	A	C	G	A	I	L	G	G	A	A	E	E	E	I	Q	K	L	R	N	F	G	L	Y	Q	G	T	L	R	G	M	M	E	M	K	N	S	H	Q	L	I	D	E	N	I	I	G	K	L	K	E	L	A
Template Known Secondary structure				T	T	S	.	S													T															T	T																										T	T	T	S
Template Predicted Secondary structure							.
Template SS confidence
		161	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
			221	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	Q	L	G	K	N	V	G	D	D	L	N
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		L	E	E	L	G	G	F	H	G	K	N	A	E
Template Known Secondary structure						T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions