Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 18 Aligned Residues 311 % Identity 23% Template c3ez3A_ PDB info PDB header:lyase Chain: A: PDB Molecule:farnesyl pyrophosphate synthase, putative; PDBTitle: crystal structure of plasmodium vivax geranylgeranylpyrophosphate2 synthase pvx_092040 with zoledronate and ipp bound Resolution 2.30 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.										30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Query Sequence		E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	.	.	.	.	.	.	.	.	.	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	.	.	.	.	.	N	A	H	V	T	I	A	A	L	I
Query Conservation																								.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.																																			.	.	.	.	.
Template Conservation
Template Sequence		A	F	F	R	N	M	Y	D	K	Y	R	D	A	F	L	S	H	L	N	E	Y	S	L	E	E	E	I	K	E	H	I	S	K	Y	Y	K	L	L	F	D	Y	N	C	L	G	G	K	N	N	R	G	I	L	V	I	L	I	Y	E	Y	V	K	N	R	I	N	S	S	E	W	E	K	A	A	C	L	A	W	C	I
Template Known Secondary structure							T														T	S	S																						S	S	S																S
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.								.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.
Query Sequence		E	F	I	H	T	A	T	L	L	H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	.	.	.	.	.	.	.	S	L	G	S	L	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E
Query Conservation																																																					.	.	.	.	.	.	.
Alig confidence																																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	L	Q	A	A	F	L	V	A	D	D	I	M	D	K	G	E	M	R	R	N	K	Y	C	W	Y	L	L	K	D	V	E	T	K	N	A	V	N	D	V	L	L	L	Y	N	S	I	Y	K	L	I	E	I	Y	L	R	N	E	S	C	Y	V	D	V	I	A	T	F	R	D	A	T	L	K	T	I	I	G	Q
Template Known Secondary structure																T	T					T	T				G	G	G	S	T	T	T																									T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.																					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																.	.
Query Sequence		V	L	Q	L	M	N	V	N	D	P	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	.	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	.	.	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																.	.
Template Conservation
Template Sequence		H	L	D	T	N	I	F	S	D	K	Y	S	E	I	D	V	N	N	I	N	V	P	E	Q	P	V	I	D	I	N	M	I	N	F	G	V	Y	K	N	I	V	I	H	K	T	A	Y	Y	S	F	F	L	P	I	V	C	G	M	L	L	A	G	I	A	V	D	N	L	I	Y	K	K	I	E	D	I	S	M	L	M
Template Known Secondary structure							T	T	S	T	T	T					T	T		S	S	S								G	G	G		S												T					T												T			T	T		T
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W
Query Conservation
Alig confidence																								.																																					.
Template Conservation																								.																																					.
Template Sequence		G	E	Y	F	Q	I	H	D	D	Y	L	D	I	F	G	D	S	T	K	T	G	K	.	V	G	S	D	I	Q	N	N	K	L	T	W	P	L	I	K	T	F	E	L	C	S	E	P	D	K	I	K	I	V	K	N	Y	G	K	N	.	N	L	A	C	V	K	V	I	D	S	L	Y	E	Q	Y	K	I	R	K	H
Template Known Secondary structure																S						S	S	.				T	T	T	T	T													S												T	T			.															T	T
Template Predicted Secondary structure																								.																																					.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	E	S	Y	E	K	A	Q	K	A	K	I	L	S	A	I	N	E	L	H	H	E	G	I	E	Y	V	L	K	Y	L	L	E	I	L	F	T
Template Known Secondary structure																		T	T	S																T	T	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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