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Job DescriptionP0AD57
Confidence100.00%DateWed Jan 25 15:20:25 GMT 2012
Rank9Aligned Residues300
% Identity32%Templatec3aq0G_
PDB info PDB header:transferaseChain: G: PDB Molecule:geranyl diphosphate synthase; PDBTitle: ligand-bound form of arabidopsis medium/long-chain length prenyl2 pyrophosphate synthase (surface polar residue mutant)
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40... ......50.........60.... .....70.........80.
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Query Sequence  NELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGG. . GKRIRPMIAVLAARAVGYEGN. . . AHVTIAALIEFIHTATL
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Template Sequence  FSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVTSELRVRQRGIAEITEMIHVASL
Template Known Secondary structure  TGGGT
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   11........20.........30.........40.........50.........60.........70.........80.........90
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  LHDDVVDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEE
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Template Sequence  LHDDVLV. . . . . . . . . . . . . VMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTAARYSMD
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   105....110. ........120.........130.........140.........150.........160.........170.
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  NYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLL
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Template Sequence  YYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPIL
Template Known Secondary structure  TTT



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   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   242.......250.........260.........270.........280.........290.........300...... ...310.....
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Query Sequence  HAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTP. . . . . . WREALIGLA
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Template Sequence  FAMEEFP. . . . QLREVVDQVAADPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLT
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   265....270. ........280.........290.........300.........310.........320.........330.........340
 
   316...320...
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Query Sequence  HIAVQRDR
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Template Sequence  HRVITRNK
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   341.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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