Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 15 Aligned Residues 320 % Identity 17% Template c2ogdB_ PDB info PDB header:transferase Chain: B: PDB Molecule:farnesyl pyrophosphate synthase; PDBTitle: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate2 bph-527 Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.										.	.	.	.
Predicted Secondary structure																																.	.	.																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.																																			.	.	.	.	.	.	.	.	.
Query Sequence		M	N	L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	.	.	.	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	.	.	.	.	.	.	.	.	.	A	H	V	T
Query Conservation																																.	.	.																																			.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.											.																								.	.	.	.	.	.	.	.	.
Template Conservation																																													.
Template Sequence		M	P	M	Q	M	F	M	Q	V	Y	D	E	I	Q	M	F	L	L	E	E	L	E	L	K	F	D	M	D	P	N	R	V	R	Y	L	R	K	M	M	D	T	T	C	.	L	G	G	K	Y	N	R	G	L	T	V	I	D	V	A	E	S	L	L	S	L	D	D	G	A	R	R	K	R	V	L	H	D	A	C	V
Template Known Secondary structure																										S																			.	S	S	S																T	T				S
Template Predicted Secondary structure																																													.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																																					.	.																											.	.	.	.	.
Query SS confidence																																					.	.																											.	.	.	.	.
Query Sequence		I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	.	.	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	.	.	.	.	.	K	V	L	E	V	M	S	E	A	V	N	V
Query Conservation																																					.	.																											.	.	.	.	.
Alig confidence																																					.	.																											.	.	.	.	.
Template Conservation
Template Sequence		C	G	W	M	I	E	F	L	Q	A	H	Y	L	V	E	D	D	I	M	D	N	S	V	T	R	R	G	K	P	C	W	Y	R	H	P	D	V	T	V	Q	C	A	I	N	D	G	L	L	L	K	S	W	T	H	M	M	A	M	H	F	F	A	D	R	P	F	L	Q	D	L	L	C	R	F	N	R	V	D	Y	T
Template Known Secondary structure																						T					T	T				G	G	G	S	T	T																										T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.																	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.															.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.															.
Query Sequence		I	A	E	G	E	V	L	Q	L	M	N	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	.	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	.	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.															.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.															.
Template Conservation
Template Sequence		T	A	V	G	Q	L	Y	D	V	T	S	M	F	D	S	N	K	L	D	P	D	V	S	Q	P	T	T	T	D	F	A	E	F	T	L	S	N	Y	K	R	I	V	K	Y	K	T	A	Y	Y	T	Y	L	L	P	L	V	M	G	L	I	V	S	E	A	L	P	T	V	D	M	G	V	T	E	E	L	A	M	L	M
Template Known Secondary structure											T	T	T	S		G	G	G			T	T	S						S	S		T	T														T					T											T	T		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W
Query Conservation
Alig confidence																								.																																					.
Template Conservation																								.																																					.
Template Sequence		G	E	Y	F	Q	V	Q	D	D	V	M	D	C	F	T	P	P	E	R	L	G	K	.	V	G	T	D	I	Q	D	A	K	C	S	W	L	A	V	T	F	L	A	K	A	S	S	A	Q	V	A	E	F	K	A	N	Y	G	S	G	.	D	S	E	K	V	A	T	V	R	R	L	Y	E	E	A	D	L	Q	G	D
Template Known Secondary structure																S						S	S	.				T	T	T	T	T																									T	T			.															T	T
Template Predicted Secondary structure																								.																																					.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	.	.	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q	R	D	R
Query Conservation																						.	.
Alig confidence																						.	.
Template Conservation
Template Sequence		Y	V	A	Y	E	A	A	V	A	E	Q	V	K	E	L	I	E	K	L	R	L	C	S	P	G	F	A	A	S	V	E	T	L	W	G	K	T	Y	K	R	Q	K
Template Known Secondary structure																						T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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