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Job DescriptionP0AD57
Confidence100.00%DateWed Jan 25 15:20:25 GMT 2012
Rank30Aligned Residues259
% Identity34%Templatec2j1pB_
PDB info PDB header:transferaseChain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: geranylgeranyl diphosphate synthase from sinapis alba in2 complex with ggpp
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30. ........40.........50.........60.........70.........80......
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Query Sequence  ELTAQDMAGVNAAILEQLNSDVQL. INQLGYYIVSGGGKRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDV
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Template Sequence  SYIIRKADSVNKALDSAVPLREPLKIHEAXRYSLLAGGKRVRPVLCIAACELVGGEESLAXPAACAVEXIHTXSLIHDDL
Template Known Secondary structure  S
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   15....20.........30.........40.........50.........60.........70.........80.........90....
 
   87 ..90.........100.........110.........120........ .130......... 140.........150....
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Query Sequence  V. . DESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGS. . . . . . . . LKVLEVMSEAV. . NVIAEGEVLQLMNVN
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Template Sequence  PCXDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEG
Template Known Secondary structure  TTTT

STT

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   95....100.........110.........120.........130.........140.........150.........160.........170....
 
   155 ....160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  D. . PDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNADGEQLGKNVGDDLN
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Template Sequence  LDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK. . . . . . . . . . . . . .
Template Known Secondary structure  TT
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   175....180.........190.........200.........210.........220.........230.........240
 
   233......240.........250.........260.........270.........280.........290.........300.........310..
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Query Sequence  EGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALI
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Template Sequence  SSKLTYPKL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . XGLEKSREFAEKLNTEARDQLLGF. DSDKVAPLL
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TTTTS.
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   241........ 250.........260.........270... ......280..
 
   313.....
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Query Sequence  GLAHIA
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Template Sequence  ALANYI
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   297..300..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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