Phyre 2 alignment of P0AD57 with c2h8oA

Job Description P0AD57
Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012

Rank 33 Aligned Residues 261

% Identity 30% Template c2h8oA_

PDB info PDB header:transferase Chain: A: PDB Molecule:geranyltranstransferase; PDBTitle: the 1.6a crystal structure of the geranyltransferase from2 agrobacterium tumefaciens

Resolution 1.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.									30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.
Query Sequence	L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	.	.	.	.	.	.	.	.	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E
Query Conservation																												.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	M	T	N	F	E	T	R	L	R	E	N	A	A	K	T	E	A	L	L	G	H	L	L	S	G	E	A	R	A	D	E	I	T	R	P	Q	N	L	L	E	A	M	R	H	G	V	L	N	G	G	K	R	L	R	P	F	L	V	I	E	S	V	A	L	L	G	G	D	A	E	A	G	L	H	V	G	A	A	L	E
Template Known Secondary structure																							T		S	S			T	T																		T	S		S														T	T
Template Predicted Secondary structure
Template SS confidence
	36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.

	75	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure													.	.																																																											.	.	.	.	.	.	.	.
Query SS confidence													.	.																																																											.	.	.	.	.	.	.	.
Query Sequence	F	I	H	T	A	T	L	L	H	D	D	V	.	.	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	.	.	.	.	.	.	.	.
Query Conservation													.	.																																																											.	.	.	.	.	.	.	.
Alig confidence													.	.																																																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	C	L	H	C	Y	S	L	V	H	D	D	L	P	A	M	D	D	D	D	L	R	R	G	Q	P	T	V	H	R	K	F	D	E	A	T	A	I	L	A	G	D	S	L	L	T	L	A	F	D	I	I	A	S	D	D	N	P	L	A	A	E	R	K	A	A	L	V	I	S	L	A	R	A	A	G	I	G	G	M	A
Template Known Secondary structure											T	S	T	T	T	T			S			T	T								S																						S	T	T	S		S																	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	G	E	V	L	Q	L	M	N	V	N	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L
Query Conservation	.
Alig confidence	.										.																																																															.	.	.	.	.	.	.
Template Conservation											.																																																															.	.	.	.	.	.	.
Template Sequence	G	G	Q	A	L	D	L	A	A	E	.	K	K	A	P	D	E	D	G	I	I	T	L	Q	A	M	K	T	G	A	L	L	R	F	A	C	E	A	G	A	I	I	A	G	S	N	Q	A	E	R	Q	R	L	R	L	F	G	E	K	I	G	L	S	F	Q	L	A	D	D	L	L	D	L	.	.	.	.	.	.	.
Template Known Secondary structure											.		S															T																T																														.	.	.	.	.	.	.
Template Predicted Secondary structure											.																																																															.	.	.	.	.	.	.
Template SS confidence
	196	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

	224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	T	K	G	T	L	V	A	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	A	W	A	R	E	K	L	Q	E	Q	V	A	E	A	S	E	L	L	A	P	Y	G
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	G	G	G	G
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											268	.	270	.	.	.	.	.	.																																						.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

	304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q
Query Conservation
Alig confidence	.	.
Template Conservation	.	.
Template Sequence	.	.	E	K	A	A	I	L	I	A	A	A	R	F	I	A	E
Template Known Secondary structure	.	.	G	G	G
Template Predicted Secondary structure	.	.
Template SS confidence
			318	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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