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Job DescriptionP0AD57
Confidence100.00%DateWed Jan 25 15:20:25 GMT 2012
Rank12Aligned Residues314
% Identity20%Templatec2f94F_
PDB info PDB header:transferaseChain: F: PDB Molecule:farnesyl diphosphate synthase; PDBTitle: crystal structure of human fpps in complex with ibandronate
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40. ........50.........60... .....
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Query Sequence  NLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVS. . . . . . GGGKRIRPMIAVLAARAVGYEG. . . . . . . NAHVT
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Template Sequence  VYAQEKQDFVQHFSQIVRVLTED. EMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWT
Template Known Secondary structure  TTTT.TTT
GGGSSSS

S
GGG

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   910.........20.........30. ........40.........50.........60.........70.........80.......
 
   6970.........80.........90.........100...... ...110.........120........ .130.........140..
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Query Sequence  IAALIEFIHTATLLHDDVVDESDMRRGKATANAAFGNA. ASVLVGDFIYTRAFQMMTSLGS. . . . . LKVLEVMSEAVNVI
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Template Sequence  VGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQT
Template Known Secondary structure  TT

TT
GGGSTTTGGGTTSTT
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   88.90.........100.........110.........120.........130.........140.........150.........160.......
 
   143......150........ .160.........170.... .....180........ .190.........200.........210.....
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Query Sequence  AEGEVLQLMNVNDPDI. . . . . TEENYMRVIYSKTARL. FEAAAQCSGILAGC. TPEEEKGLQDYGRYLGTAFQLIDDLLD
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Template Sequence  EIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLD
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TTS

GGG

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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   216...220.........230.........240.........250.........260.........270.........280.........290.....
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Query Sequence  YNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKA
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Template Sequence  LFGDPSVTGK. IGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQK. EAEKVARVKALYEELDLPAVFLQYEEDSYSHI
Template Known Secondary structure  S
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TTTTT




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   248.250....... ..260.........270.........280.........290... ......300.........310.........320.....
 
   296...300.........310........
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Query Sequence  IAALQVLPDTPWREALIGLAHIA
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Template Sequence  MALIEQYAAPLPPAVFLGLARKI
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   326...330.........340........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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