Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 12 Aligned Residues 314 % Identity 20% Template c2f94F_ PDB info PDB header:transferase Chain: F: PDB Molecule:farnesyl diphosphate synthase; PDBTitle: crystal structure of human fpps in complex with ibandronate Resolution 1.94 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.								.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.																							.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.																							.	.	.	.	.	.	.
Query Sequence		N	L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	.	.	.	.	.	.	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	.	.	.	.	.	.	.	N	A	H	V	T
Query Conservation																																										.	.	.	.	.	.																							.	.	.	.	.	.	.
Alig confidence																									.																	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		V	Y	A	Q	E	K	Q	D	F	V	Q	H	F	S	Q	I	V	R	V	L	T	E	D	.	E	M	G	H	P	E	I	G	D	A	I	A	R	L	K	E	V	L	E	Y	N	A	I	G	G	K	Y	N	R	G	L	T	V	V	V	A	F	R	E	L	V	E	P	R	K	Q	D	A	D	S	L	Q	R	A	W	T
Template Known Secondary structure		T	T										T											T	.	T	T	T		G	G	G															S	S	S	S																S		G	G	G
Template Predicted Secondary structure																									.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																																								.																							.	.	.	.	.
Query SS confidence																																								.																							.	.	.	.	.
Query Sequence		I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	.	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	.	.	.	.	.	L	K	V	L	E	V	M	S	E	A	V	N	V	I
Query Conservation																																								.																							.	.	.	.	.
Alig confidence																																								.																							.	.	.	.	.
Template Conservation
Template Sequence		V	G	W	C	V	E	L	L	Q	A	F	F	L	V	A	D	D	I	M	D	S	S	L	T	R	R	G	Q	I	C	W	Y	Q	K	P	G	V	G	L	D	A	I	N	D	A	N	L	L	E	A	C	I	Y	R	L	L	K	L	Y	C	R	E	Q	P	Y	Y	L	N	L	I	E	L	F	L	Q	S	S	Y	Q	T
Template Known Secondary structure																					T	T					T	T				G	G	G	S	T	T	T	G	G	G																					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																	.															.
Query SS confidence																		.	.	.	.	.																	.															.
Query Sequence		A	E	G	E	V	L	Q	L	M	N	V	N	D	P	D	I	.	.	.	.	.	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	.	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	.	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D
Query Conservation																		.	.	.	.	.																	.															.
Alig confidence																		.	.	.	.	.																	.															.
Template Conservation
Template Sequence		E	I	G	Q	T	L	D	L	L	T	A	P	Q	G	N	V	D	L	V	R	F	T	E	K	R	Y	K	S	I	V	K	Y	K	T	A	F	Y	S	F	Y	L	P	I	A	A	A	M	Y	M	A	G	I	D	G	E	K	E	H	A	N	A	K	K	I	L	L	E	M	G	E	F	F	Q	I	Q	D	D	Y	L	D
Template Known Secondary structure														T	T	S			G	G	G														T					T											T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A
Query Conservation
Alig confidence												.																																					.
Template Conservation												.																																					.
Template Sequence		L	F	G	D	P	S	V	T	G	K	.	I	G	T	D	I	Q	D	N	K	C	S	W	L	V	V	Q	C	L	Q	R	A	T	P	E	Q	Y	Q	I	L	K	E	N	Y	G	Q	K	.	E	A	E	K	V	A	R	V	K	A	L	Y	E	E	L	D	L	P	A	V	F	L	Q	Y	E	E	D	S	Y	S	H	I
Template Known Secondary structure				S						S	S	.				T	T	T	T	T																									T	T			.															T	T
Template Predicted Secondary structure												.																																					.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	L	I	E	Q	Y	A	A	P	L	P	P	A	V	F	L	G	L	A	R	K	I
Template Known Secondary structure										T	T	S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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