Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 20 Aligned Residues 294 % Identity 22% Template c2e8xB_ PDB info PDB header:transferase Chain: B: PDB Molecule:geranylgeranyl pyrophosphate synthetase; PDBTitle: s. cerevisiae geranylgeranyl pyrophosphate synthase in2 complex with magnesium and gpp Resolution 2.04 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.								30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.
Query Sequence		G	V	N	A	A	I	L	E	Q	L	N	S	D	V	.	.	.	.	.	.	.	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D	D	V	V	D
Query Conservation																.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	E	A	K	I	D	E	L	I	N	N	D	P	V	W	S	S	Q	N	E	S	L	I	S	K	P	Y	N	H	I	L	L	K	P	G	K	N	F	R	L	N	L	I	V	Q	I	N	R	V	M	N	L	P	K	D	Q	L	A	I	V	S	Q	I	V	E	L	L	H	N	S	S	L	L	I	D	D	I	E	D
Template Known Secondary structure												T	S																					T	S	S																																													T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160
Predicted Secondary structure																																										.	.	.	.	.																										.	.	.
Query SS confidence																																										.	.	.	.	.																										.	.	.
Query Sequence		E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	.	.	.	.	.	L	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E	V	L	Q	L	M	N	V	.	.	.	N	D	P	D	I	T	E
Query Conservation																																										.	.	.	.	.																										.	.	.
Alig confidence																																										.	.	.	.	.																										.	.	.
Template Conservation
Template Sequence		N	A	P	L	R	R	G	Q	T	T	S	H	L	I	F	G	V	P	S	T	I	N	T	A	N	Y	M	Y	F	R	A	M	Q	L	V	S	Q	L	T	T	K	E	P	L	Y	H	N	L	I	T	I	F	N	E	E	L	I	N	L	H	R	G	Q	G	L	D	I	Y	W	R	D	F	L	P	E	I	I	P	T	Q
Template Known Secondary structure		T		S			T	T																													T	T	S																																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L
Query Conservation
Alig confidence																																.	.	.																										.	.	.	.
Template Conservation																																.	.	.																										.	.	.	.
Template Sequence		E	M	Y	L	N	M	V	M	N	K	T	G	G	L	F	R	L	T	L	R	L	M	E	A	L	S	P	S	H	G	.	.	.	H	S	L	V	P	F	I	N	L	L	G	I	I	Y	Q	I	R	D	D	Y	L	N	L	K	D	.	.	.	.	F	Q	M	S	F	A	E	D	I	T	E	G	K	L	S	F	P	I
Template Known Secondary structure																																.	.	.	S		S																							.	.	.	.			T									T
Template Predicted Secondary structure																																.	.	.																										.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		241	.	.	.	.	.						.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																															.
Query SS confidence								.	.	.	.	.																															.
Query Sequence		L	H	A	M	H	H	.	.	.	.	.	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	.	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	D	T	P	W	R	E	A	L	I	G	L
Query Conservation								.	.	.	.	.																															.
Alig confidence								.	.	.	.	.																															.
Template Conservation
Template Sequence		V	H	A	L	N	F	T	K	T	K	G	Q	T	E	Q	H	N	E	I	L	R	I	L	L	L	R	T	S	D	K	D	I	K	L	K	L	I	Q	I	L	E	F	D	T	N	S	L	A	Y	T	K	N	F	I	N	Q	L	V	N	M	I	K	N	D	N	E	N	K	Y	L	P	E	L	L	Y	I	I	D	H	L
Template Known Secondary structure											T	T															T																	T	S																			T		S	S		S	S										S	G
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		315	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		338	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions