Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 17 Aligned Residues 319 % Identity 18% Template c1yhlA_ PDB info PDB header:transferase Chain: A: PDB Molecule:farnesyl pyrophosphate synthase; PDBTitle: structure of the complex of trypanosoma cruzi farnesyl diphosphate2 synthase with risedronate, dmapp and mg+2 Resolution 1.95 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.												.	.	.	.
Predicted Secondary structure																															.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	L	E	K	I	N	E	L	T	A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	.	.	.	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	.	.	.	.	.	.	.	.	.	.	.	N	A	H	V
Query Conservation																															.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.											.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.
Template Sequence		S	M	E	R	F	L	S	V	Y	D	E	V	Q	A	F	L	L	D	Q	L	Q	S	K	Y	E	I	D	P	N	R	A	R	Y	L	R	I	M	M	D	T	T	C	.	L	G	G	K	Y	F	R	G	M	T	V	V	N	V	A	E	G	F	L	A	V	T	Q	H	D	E	A	T	K	E	R	I	L	H	D	A	C
Template Known Secondary structure		T																																										.	S	S	S																	T	T	S
Template Predicted Secondary structure																																												.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																								.	.																									.	.	.	.	.
Query SS confidence																																								.	.																									.	.	.	.	.
Query Sequence		T	I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D	D	V	V	D	E	S	D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	.	.	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	S	L	.	.	.	.	.	K	V	L	E	V	M	S	E	A	V	N
Query Conservation																																								.	.																									.	.	.	.	.
Alig confidence																																								.	.																									.	.	.	.	.
Template Conservation
Template Sequence		V	G	G	W	M	I	E	F	L	Q	A	H	Y	L	V	E	D	D	I	M	D	G	S	V	M	R	R	G	K	P	C	W	Y	R	F	P	G	V	T	T	Q	C	A	I	N	D	G	I	I	L	K	S	W	T	Q	I	M	A	W	H	Y	F	A	D	R	P	F	L	K	D	L	L	C	L	F	Q	K	V	D	Y
Template Known Secondary structure																							T					T	T				G	G	G	S	T	T	T																								S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.																	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.														.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.														.
Query Sequence		V	I	A	E	G	E	V	L	Q	L	M	N	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	D	I	T	E	E	N	Y	M	R	V	I	Y	S	K	T	A	R	L	.	F	E	A	A	A	Q	C	S	G	I	L	A	G	.	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.														.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.														.
Template Conservation
Template Sequence		A	T	A	V	G	Q	M	Y	D	V	T	S	M	C	D	S	N	K	L	D	P	E	V	A	Q	P	M	T	T	D	F	A	E	F	T	P	A	I	Y	K	R	I	V	K	Y	K	T	T	F	Y	T	Y	L	L	P	L	V	M	G	L	F	V	S	E	A	A	A	S	V	E	M	N	L	V	E	R	V	A	H	L
Template Known Secondary structure												T	T	T	B		G	G	G			T	T	S				B		S	S		T	T		S												T					T											T	T		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A	M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E
Query Conservation
Alig confidence																									.																																						.
Template Conservation																									.																																						.
Template Sequence		I	G	E	Y	F	Q	V	Q	D	D	V	M	D	C	F	T	P	P	E	Q	L	G	K	.	V	G	T	D	I	E	D	A	K	C	S	W	L	A	V	T	F	L	G	K	A	N	A	A	Q	V	A	E	F	K	A	N	Y	G	D	K	D	.	P	A	K	V	A	V	V	K	R	L	Y	S	E	A	N	L	Q	A
Template Known Secondary structure																	S						S	S	.				T	T	T	T	T											T	T													T	T				.														T	T
Template Predicted Secondary structure																									.																																						.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	L	P	.	.	D	T	P	W	R	E	A	L	I	G	L	A	H	I	A	V	Q	R	D	R
Query Conservation																							.	.
Alig confidence																							.	.
Template Conservation
Template Sequence		D	F	A	A	Y	E	A	E	V	V	R	E	V	E	S	L	I	E	Q	L	K	V	K	S	P	T	F	A	E	S	V	A	V	V	W	E	K	T	H	K	R	K	K
Template Known Secondary structure																						T	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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