Job Description P0AD57 Confidence 100.00% Date Wed Jan 25 15:20:25 GMT 2012 Rank 6 Aligned Residues 309 % Identity 27% Template c1wmwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:geranylgeranyl diphosphate synthetase; PDBTitle: crystal structure of geranulgeranyl diphosphate synthase from thermus2 thermophilus Resolution 1.55 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	D	M	A	G	V	N	A	A	I	L	E	Q	L	N	S	D	V	Q	L	I	N	Q	L	G	Y	Y	I	V	S	G	G	G	K	R	I	R	P	M	I	A	V	L	A	A	R	A	V	G	Y	E	G	N	A	H	V	T	I	A	A	L	I	E	F	I	H	T	A	T	L	L	H	D	D	V	V	D	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	I	R	Q	A	L	Q	E	R	L	L	A	R	L	D	H	P	D	P	L	Y	R	D	L	L	Q	D	Y	P	R	R	G	G	K	M	L	R	G	L	L	T	V	Y	S	A	L	A	H	G	A	P	L	E	A	G	L	E	A	A	T	A	L	E	L	F	Q	N	W	V	L	V	H	D	D	I	E	D	G	S
Template Known Secondary structure																T			S	S													T																	T	T																													T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																							.	.	.	.	.																											.	.
Query SS confidence																																							.	.	.	.	.																											.	.
Query Sequence		D	M	R	R	G	K	A	T	A	N	A	A	F	G	N	A	A	S	V	L	V	G	D	F	I	Y	T	R	A	F	Q	M	M	T	S	L	G	.	.	.	.	.	S	L	K	V	L	E	V	M	S	E	A	V	N	V	I	A	E	G	E	V	L	Q	L	M	N	V	.	.	N	D	P	D	I	T	E	E	N	Y
Query Conservation																																							.	.	.	.	.																											.	.
Alig confidence																																							.	.	.	.	.																											.	.
Template Conservation
Template Sequence		E	E	R	R	G	R	P	A	L	H	R	L	H	P	M	P	L	A	L	N	A	G	D	A	M	H	A	E	M	W	G	L	L	A	E	G	L	A	R	G	L	F	P	P	E	V	L	L	E	F	H	E	V	V	R	R	T	A	Y	G	Q	H	L	D	L	L	W	T	L	G	G	T	F	D	L	R	P	E	D	Y
Template Known Secondary structure					T	T								S																										T	T	S	S																												S	S	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	V	I	Y	S	K	T	A	R	L	F	E	A	A	A	Q	C	S	G	I	L	A	G	C	T	P	E	E	E	K	G	L	Q	D	Y	G	R	Y	L	G	T	A	F	Q	L	I	D	D	L	L	D	Y	N	A	D	G	E	Q	L	G	K	N	V	G	D	D	L	N	E	G	K	P	T	L	P	L	L	H	A
Query Conservation
Alig confidence																															.																											.
Template Conservation																															.																											.
Template Sequence		F	R	M	V	A	H	K	A	A	Y	Y	T	A	V	A	P	L	R	L	G	A	L	L	A	G	K	T	P	P	.	A	A	Y	E	E	G	G	L	R	L	G	T	A	F	Q	I	V	D	D	V	L	N	L	E	G	G	.	E	A	Y	G	K	E	R	A	G	D	L	Y	E	G	K	R	T	L	I	L	L	R	F
Template Known Secondary structure									T																T	T					.																								S		S	.				S	S	S	T	T						T
Template Predicted Secondary structure																															.																											.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.					.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.																																											.	.	.	.
Query SS confidence																		.	.	.																																											.	.	.	.
Query Sequence		M	H	H	G	T	P	E	Q	A	Q	M	I	R	T	A	I	.	.	.	E	Q	G	N	G	R	H	L	L	E	P	V	L	E	A	M	N	A	C	G	S	L	E	W	T	R	Q	R	A	E	E	E	A	D	K	A	I	A	A	L	Q	V	.	.	.	.	L	P	D	T	P	W	R	E	A	L	I	G	L	A	H
Query Conservation																		.	.	.																																											.	.	.	.
Alig confidence																		.	.	.																																											.	.	.	.
Template Conservation
Template Sequence		L	E	E	A	P	P	E	E	R	A	R	A	L	A	L	L	A	L	P	R	E	A	K	P	E	A	E	V	G	W	L	L	E	R	L	L	A	S	R	A	L	A	W	A	K	A	E	A	K	R	L	Q	A	E	G	L	A	L	L	E	A	A	F	Q	D	L	P	G	K	E	A	L	D	H	L	R	G	L	L	A
Template Known Secondary structure					S													T	S		G	G	G	S															S																							T	G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		317	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	V	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	V	E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions