Job Description P27305 Confidence 99.90% Date Thu Jan 5 11:43:51 GMT 2012 Rank 17 Aligned Residues 218 % Identity 18% Template c3sp1B_ PDB info PDB header:ligase Chain: B: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: crystal structure of cysteinyl-trna synthetase (cyss) from borrelia2 burgdorferi Resolution 2.55 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																											.	.	.	.	.																						.	.	.	.
Query SS confidence																											.	.	.	.	.																						.	.	.	.
Query Sequence		A	P	S	P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	.	.	.	.	.	R	Q	G	R	W	L	V	R	I	E	D	I	D	P	P	R	E	V	P	G	A	.	.	.	.	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	V	L	W	Q	S	Q	R
Query Conservation																											.	.	.	.	.																						.	.	.	.
Alig confidence																											.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		G	P	T	V	Y	N	Y	A	H	I	G	N	F	R	T	Y	I	F	G	D	L	L	I	K	T	L	R	F	L	G	Y	K	V	N	Y	A	M	N	I	T	D	I	G	H	G	L	T	V	Y	E	I	S	E	F	F	T	E	A	F	F	N	D	C	R	K	L	N	I	V	Y	P	D	K	V	L	V	A	S	K	H
Template Known Secondary structure				B	S	S	S																							T	T										B		S																								T	T					S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		H	D	A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	.	.	.	.	.	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.								.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	P	I	M	I	E	V	V	K	I	L	E	E	K	K	I	T	Y	F	S	N	G	N	V	Y	F	D	T	S	C	F	.	.	.	.	.	.	.	.	.	K	S	Y	G	E	M	A	G	I	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R
Template Known Secondary structure															T	T						T	T						G	G	G		.	.	.	.	.	.	.	.	.	T	T	T	T	G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.										.	.	160	.	.	.	.	.	.	.	.																												.	170
		167	.	.	170	.	.	.	.	.	.																	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.																																						.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.																																						.
Query Sequence		A	R	E	D	F	I	I	H	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	L	F	A	.	.	.	.	.	.	.	.	.	.	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	.	G
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.																																						.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.															.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		N	K	T	D	F	V	L	W	F	T	N	S	K	F	K	D	Q	E	M	K	W	D	S	P	W	G	F	G	Y	P	S	W	H	L	E	C	A	A	M	N	L	E	Y	F	K	D	A	L	D	I	H	L	G	G	V	D	H	I	.	.	.	.	.	.	G	V	H	H	I	N	E	I	A	I	A	E	C	F	L	N
Template Known Secondary structure		S	T	T									S				T	T				B			T	T		S																		T	T									G	G	G	T	.	.	.	.	.	.	T	T														T
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.							.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	A	K	L	S	K	Q	N	H	A	P	A	L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	F	L	G	Q	Q	A	E	A	H	W	Q	D	F	S	V	E	Q	I	L	Q	S
Query Conservation
Alig confidence																																																						.	.	.
Template Conservation																																																						.	.	.
Template Sequence		K	K	W	C	D	V	F	V	H	G	E	F	L	I	M	D	Y	N	K	M	S	F	I	T	V	K	D	L	E	D	Q	N	F	S	P	L	D	F	R	Y	L	C	L	T	S	H	Y	R	N	Q	L	K	.	.	.	F	S	L	D	N	L	Q	A	S
Template Known Secondary structure		S				S										S	S	S	S	B												T	T												T	S		T	T	S				.	.	.
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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