Job Description P27305 Confidence 98.75% Date Thu Jan 5 11:43:51 GMT 2012 Rank 41 Aligned Residues 208 % Identity 18% Template c2cyaA_ PDB info PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase from aeropyrum pernix Resolution 2.20 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																				.	.	.	.	.					.	.	.	.
Query SS confidence																																				.	.	.	.	.					.	.	.	.
Query Sequence		S	P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	R	Q	G	R	W	L	V	R	I	E	D	.	.	.	.	.	I	D	P	P	.	.	.	.	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	V	L	W	Q	S	Q	R	H	D
Query Conservation																																				.	.	.	.	.					.	.	.	.
Alig confidence																									.											.	.	.	.	.					.	.	.	.
Template Conservation																									.
Template Sequence		E	P	S	G	V	A	H	I	G	W	L	V	W	M	Y	K	V	K	D	L	V	E	A	.	G	V	D	F	S	V	L	E	A	T	W	H	A	Y	I	N	D	K	L	G	G	D	M	D	L	I	R	A	A	A	R	I	V	R	R	V	M	E	A	A	G	V	P	V	E	R	V	R	F	V	D	A	E	E	L	A
Template Known Secondary structure					S	S		B	T															T	.	T															T	T	G	G	G	G																			T	T			G	G	G
Template Predicted Secondary structure																									.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	Y	D	G	H	C	R	V	L	H	H	G	P	D	N	A	A	V	R	I	R	Q	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F	I	I
Query Conservation
Alig confidence															.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation															.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Sequence		S	D	K	D	Y	W	G	L	V	I	R	V	A	.	.	.	.	K	R	A	S	L	A	R	V	R	R	A	L	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	E	V	D	A	S	.	.	.	.
Template Known Secondary structure		T													.	.	.	.		T	S							T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S		T		.	.	.	.
Template Predicted Secondary structure															.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.																																							.	150	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	T	E	I	V	R	G	A	D	L	I	E	P	T	V	R	Q	I	S	L	Y	Q	L	F	G	W	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	.	A	K	L	S	K	Q	N	H	A	P	A	L	P	K	G	D
Query Conservation																																																																	.
Alig confidence		.	.	.	.	.																																																											.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	K	L	I	Y	P	L	M	Q	V	S	D	I	F	Y	M	D	L	D	I	A	L	G	G	M	D	Q	R	K	A	H	M	L	A	R	D	V	A	E	K	L	G	R	K	K	P	V	A	I	H	T	P	I	I	S	S	L	Q	G	P	V	K	M	S	K	S	K	P	E	T	A	V	F	V	V	D
Template Known Secondary structure		.	.	.	.	.															T	T		S						G	G	G												T	T	T	T													B		S	S				B			S	S	S	G	G	G	S		B	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	P	V	L	I	A	A	L	Q	F	L	G	Q	Q	A	E	A	H	W	Q	D	F	S	V	E	Q	I	L	Q	S
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		S	D	D	D	I	R	R	K	I	R	K	.	A	Y	C	P	A	K	Q	V	Q	G	N	P	V	L	E	I	A	R	Y
Template Known Secondary structure												T	.	S				T	T			T	T
Template Predicted Secondary structure													.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions