41 c2cyaA_ Probab=98.75   E-value=9.7e-07  Score=60.80  Aligned_columns=208  Identities=18%

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEC-----CCCC----CCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHH
Q ss_conf             7587674467999999899999718859999802-----8765----386679999999999838878887066200089
Q batch____        23 SPSGELHFGSLIAALGSYLQARARQGRWLVRIED-----IDPP----REVPGAAETILRQLEHYGLHWDGDVLWQSQRHD   93 (308)
Q Consensus        23 SPtG~LHiG~~r~al~n~l~Ar~~~G~~iLRieD-----tD~~----r~~~~~~~~I~~~L~wlGl~~De~~~~QS~r~~   93 (308)
                      .|||.|||||...++..+.+.+. |...++=|-|     .|+.    .....+.+.+...+..+|++++.-.+++.....
T Consensus        40 ~PTg~lHlG~~i~~~~~~~~~~~-g~~~~~lIaD~~a~~~d~~~~~~~~~~~~~~~~~~~~~a~g~~~~k~~~~~~S~~~  118 (328)
T c2cyaA_          40 EPSGVAHIGWLVWMYKVKDLVEA-GVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELA  118 (328)
T ss_dssp             CCCSSCBTHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHH
T ss_conf             56883407789999999999977-99389997183565268889998997632999999999717794568987363011


Q ss_pred             HHHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCEEE
Q ss_conf             99999999998898652488989986411358998768973348342999712786148898999996078888787289
Q batch____        94 AYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFII  173 (308)
Q Consensus        94 ~Y~~~~~~Li~~G~aY~C~Csr~e~~~~~~~y~~~cr~~~~~~~~~~~Rlr~~~~~~~~~D~~~g~~~~~~~~~~~D~vi  173 (308)
                      ...++...+..-+    ..++..+++.....                                      ......+    
T Consensus       119 ~~~~~~~~~~~l~----~~~~~~~~~~~~~~--------------------------------------~~~~~~~----  152 (328)
T c2cyaA_         119 SDKDYWGLVIRVA----KRASLARVRRALAE--------------------------------------EAEVDAS----  152 (328)
T ss_dssp             TCHHHHHHHHHHH----HTSCHHHHHTTCCC--------------------------------------GGGSCTH----
T ss_pred             HHHHHHHHHHHHH----CCCCHHHHHHHHCC--------------------------------------CCCCCHH----
T ss_conf             2578999998641----01029999986404--------------------------------------6787499----


Q ss_pred             EECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEEEECCCC-CEEEECCCHHHHHCCC
Q ss_conf             953886412225444111229984774330005918999999985889973898423367888-6601115313666689
Q batch____       174 HRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG-AKLSKQNHAPALPKGD  252 (308)
Q Consensus       174 ~R~dg~ptY~fA~vVDD~~~gIThViRG~d~l~~t~~Q~~l~~aLg~~~P~y~H~pli~~~~g-~kLSKr~~~~~i~~g~  252 (308)
                           ..+|-.--+.|=...+.++|+-|.|-..+--.-.-+.+-||.+.|...+.|++.+.+| +|+||+.....|.-.|
T Consensus       153 -----~~~YP~lQaaDil~~~~~i~~~G~DQ~~~~~l~rd~~~~~~~~~~~~i~~pll~~l~G~~KMSkS~~~s~I~l~D  227 (328)
T c2cyaA_         153 -----KLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPVKMSKSKPETAVFVVD  227 (328)
T ss_dssp             -----HHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCCCBCCSSSGGGSCBTTC
T ss_pred             -----HHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECC
T ss_conf             -----999999875366525898899832222589999999997298784577511234677877788888884588338


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             6268999999849987411013899999999
Q batch____       253 PRPVLIAALQFLGQQAEAHWQDFSVEQILQS  283 (308)
Q Consensus       253 ~~~~~~~~L~~lG~~~~~~~~~~s~~~~l~~  283 (308)
                      .+.-+-+-++. ..++....+.-...+....
T Consensus       228 ~~~~i~~KI~~-a~t~~~~~~~~p~~~~~~~  257 (328)
T c2cyaA_         228 SDDDIRRKIRK-AYCPAKQVQGNPVLEIARY  257 (328)
T ss_dssp             CHHHHHHHHHT-SCCCTTCCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHH-HCCCCCCCCCCCCCCHHHH
T ss_conf             98999999975-2387754554672200122