Job Description P27305 Confidence 100.00% Date Thu Jan 5 11:43:51 GMT 2012 Rank 13 Aligned Residues 276 % Identity 13% Template c1irxA_ PDB info PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of class i lysyl-trna synthetase Resolution 2.60 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.																																									.
Query SS confidence																																				.	.	.	.	.																																									.
Query Sequence		T	D	T	Q	Y	I	G	R	F	A	P	S	P	S	G	E	L	H	F	G	S	L	I	A	A	L	G	S	Y	L	Q	A	R	A	.	.	.	.	.	R	Q	G	R	W	L	V	R	I	E	D	I	D	P	P	R	E	V	P	G	A	A	E	T	I	L	R	Q	L	E	H	Y	G	L	H	W	D	G	D	V	.
Query Conservation																																				.	.	.	.	.																																									.
Alig confidence																																				.	.	.	.	.																												.	.												.
Template Conservation																																																																				.	.
Template Sequence		E	K	E	K	Y	V	V	E	S	G	I	T	P	S	G	Y	V	H	V	G	N	F	R	E	L	F	T	A	Y	I	V	G	H	A	L	R	D	K	G	Y	E	V	R	H	I	H	M	W	D	D	Y	D	R	F	R	K	V	P	R	N	V	P	Q	E	W	K	.	.	D	Y	L	G	M	P	I	S	E	V	P	D
Template Known Secondary structure				S											S	S																						T	T	T											T	T	S	B						S	S	S		G	G	G	G	.	.	G	G	T	T	S	B	G	G	G	S
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.
												86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.										.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	L	W	Q	S	Q	R	H	D	A	Y	R	E	A	L	A	W	L	H	E	Q	G	L	S	Y	Y	C	T	C	T	R	A	R	I	Q	S	I	G	G	I	.	.	.	.	.	.	.	.	.	Y	D	G	H	C	R	V	L	H	H	G	P	.	.	.	.	.	.	D	N	A	A
Query Conservation		.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.															.																									.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation																										.
Template Sequence		P	W	G	C	H	E	S	Y	A	E	H	F	M	R	K	F	E	E	E	V	E	K	L	G	.	I	E	V	D	L	L	Y	A	S	E	L	Y	K	R	G	E	Y	S	E	E	I	R	L	A	F	E	K	R	D	K	I	M	E	I	L	N	K	Y	R	E	I	A	K	Q	P	P	L	P	E	N	W	W	P	A	M
Template Known Secondary structure		T	T	S	S	S	S	S															T	T	T	.														T	T	T	T										T															T	T						T	T			S
Template Predicted Secondary structure																										.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		141	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.
Predicted Secondary structure							.	.	.																																																														.	.	.	.	.
Query SS confidence							.	.	.																																																														.	.	.	.	.
Query Sequence		V	R	I	R	Q	.	.	.	Q	H	P	V	T	Q	F	T	D	Q	L	R	G	I	I	H	A	D	E	K	L	A	R	E	D	F	I	I	H	R	R	D	G	L	F	A	Y	N	L	A	V	V	V	D	D	H	F	Q	G	V	T	E	I	V	R	G	A	D	L	I	E	.	.	.	.	.	P	T	V	R	Q	I
Query Conservation							.	.	.																																																														.	.	.	.	.
Alig confidence							.	.	.																					.																																									.	.	.	.	.
Template Conservation																														.
Template Sequence		V	Y	C	P	E	H	R	R	E	A	E	I	I	E	W	D	G	G	W	K	V	K	Y	K	C	P	E	G	.	H	E	G	W	V	D	I	R	S	G	N	V	K	L	R	W	R	V	D	W	P	M	R	W	S	H	F	G	V	D	F	E	P	A	G	K	D	H	L	V	A	G	S	S	Y	D	T	G	K	E	I
Template Known Secondary structure					T	T	T											S	S	S							S	S	S	.							T	T	S	S																	S				B									S	T	T	S
Template Predicted Secondary structure																														.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	Y	Q	L	F	G	W	K	V	P	D	Y	I	H	L	P	L	A	L	N	P	Q	G	A	K	L	S	K	Q	N	H	A	P	A	L	P	K	G	D	P	R	P	V	L	I	A	A	L	Q	F	L	G	Q	Q	A	E	A	H	W	Q	D	F	S	V	E	Q	I	L	Q	S	A	V	K	N	W	R	L	T	A
Query Conservation
Alig confidence		.																																	.	.	.	.	.																																		.	.	.	.
Template Conservation		.																																	.	.	.	.	.																																		.	.	.	.
Template Sequence		.	I	K	E	V	Y	G	K	E	A	P	L	S	L	M	Y	E	F	V	G	I	K	G	Q	N	V	I	L	L	S	D	L	Y	.	.	.	.	.	E	V	L	E	P	G	L	V	R	F	I	Y	A	R	H	R	P	N	K	E	I	K	I	D	L	G	L	G	I	L	N	L	Y	.	.	.	.	D	E	F	E	K
Template Known Secondary structure		.											B										S												.	.	.	.	.	T	T	S											S	S		T	T	S							S	T	T						.	.	.	.
Template Predicted Secondary structure		.																																	.	.	.	.	.																																		.	.	.	.
Template SS confidence
			254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.						.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.					.	320	.	.	.
		293	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	E	S	A	I	V	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	R	I	Y	F	G	V	E
Template Known Secondary structure							T	T	S
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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