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Job DescriptionP22259
Confidence100.00%DateThu Jan 5 11:38:50 GMT 2012
Rank4Aligned Residues499
% Identity45%Templatec1ii2B_
PDB info PDB header:lyaseChain: B: PDB Molecule:phosphoenolpyruvate carboxykinase; PDBTitle: crystal structure of phosphoenolpyruvate carboxykinase2 (pepck) from trypanosoma cruzi
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80.........90.........100..
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Query Sequence  IVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETW
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Template Sequence  IHRNLLSPELVQWALKIEK. . . . DSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGK. . . . . . VNMKLSEESF
Template Known Secondary structure  S


T....T

TTS


TT
SS

GGG

TTTTTTS
BTT......TB

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   5....10.........20... ......30.........40.........50.........60.... .....70....
 
   103......110....... ..120.........130.........140.........150.........160... ......170.........180
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Query Sequence  QHLKGLVTRQLSGKR. LFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGF. KPDFIVMNGAKCTNPQW
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Template Sequence  ARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKA. DP
Template Known Secondary structure  TTSS
S
TTT
SSSB


T

S
STTS

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T
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   75....80.........90.........100.........110.........120.........130.........140.........150. ..
 
   181........190.........200.........210.........220.........230.........240.........250.........260
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Query Sequence  KEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTD
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Template Sequence  SIPGLTSTTCVALNFKTREQVILGTEYAGEMKKGILTVMFELMPQMNHLCMHASANVGKQGDVTVFFGLSGTGKTTLSAD
Template Known Secondary structure  TSTT

SS
TTTTS


TTT
S
TT



TTSS
B
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   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   261........270.........280.........290.........300.........310.........320 .........330.........
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Query Sequence  PKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGT. IDFDDGSKTENTRVSYPIY
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Template Sequence  PHRNLIGDDEHVWTDRGVFNIEGGCYAKAIGLNPKTEKDIYDAVRFGAVAENCVLDKRTGEIDFYDESICKNTRVAYPLS
Template Known Secondary structure  TTBSS

SS
S
S
TT

TTT
SSTT
S

TTT

TT

SS
S

GG
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   234.....240.........250.........260.........270.........280.........290.........300.........310...
 
   340.........350.........360.........370.........380.........390.........400.........410.........
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Query Sequence  HIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPT
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Template Sequence  HIEGALSK. AIAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANVPTAR. . . . . . . PIFSSCFGGPFLVRHAT
Template Known Secondary structure  GSTT

SS.



S

TTS
S
S





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TTT

S
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   314.....320. ........330.........340.........350.........360........ .370.........380.....
 
   420.........430.........440...... ...450.........460.........470.........480.........490....
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Query Sequence  QYAEVLVKRMQAAGAQAYLVNTGWNGT. . . . . GKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGVDTKIL
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Template Sequence  FYGEQLAEKMQKHNSRVWLLNTGYAGGRADRGAKRMPLRVTRAIIDAIHDGTLDRTEYEEYPGWGLHIPKYVAKVPEHLL
Template Known Secondary structure  T

SSS
GGGT


SSTTTS
TTTTS
BTTB
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   394.....400.........410.........420.........430.........440.........450.........460.........470...
 
   495....500.........510.........520.........530.........540
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Query Sequence  DPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPKL
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Template Sequence  NPRKAWKDVRQFNETSKELVAMFQESFSARFAAKASQEMKSAVPRY
Template Known Secondary structure  S
S
TGGG

S


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   474.....480.........490.........500.........510.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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