Phyre 2 alignment of P0AF12 with c3snrA

Job Description P0AF12
Confidence 5.29% Date Thu Jan 5 11:24:52 GMT 2012

Rank 92 Aligned Residues 65

% Identity 22% Template c3snrA_

PDB info PDB header:transport protein Chain: A: PDB Molecule:extracellular ligand-binding receptor; PDBTitle: rpd_1889 protein, an extracellular ligand-binding receptor from2 rhodopseudomonas palustris.

Resolution 1.49 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence	M	K	I	G	I	I	G	A	M	E	E	E	V	T	L	L	R	D	K	I	E	N	R	Q	T	I	S	L	G	G	C	E	I	Y	T	G	Q	L	N	G	T	E	V	A	L	L	K	.	.	S	G	I	G	K	V	A	A	A	L	G	A	T	L	L	L	E	H	C	K	P	D	V	I	I
Query Conservation																																																.	.
Alig confidence																							.	.	.	.	.	.	.																			.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence	I	T	V	G	I	S	V	T	T	T	G	P	A	A	A	L	G	I	P	E	R	N	.	.	.	.	.	.	.	A	L	E	F	V	V	K	E	I	S	G	H	P	I	K	I	I	V	L	D	D	G	G	D	P	T	A	A	T	T	N	A	R	R	F	V	T	E	S	K	A	D	V	I	X
Template Known Secondary structure										S	S	T	T										.	.	.	.	.	.	.	G	G	G	G	S		S			T	T											T	T															T	S			S
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
	31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.								.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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