Job Description P0ABA6 Confidence 16.39% Date Thu Jan 5 11:15:03 GMT 2012 Rank 45 Aligned Residues 38 % Identity 34% Template c3o3xA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:gp41-5; PDBTitle: crystal structure of gp41-5, a single-chain 5-helix-bundle based on2 hiv gp41 Resolution 1.45 Å

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		242	.	.	.	.													.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	M	V	A	.	.	.	.	.	.	.	.	.	.	.	.	M	K	A	A	T	D	N	G	G	S	L	I	K	E	L	Q	L	V	Y	N	K	A	R	Q	A	S	I	T	Q	E	L	T	E	I	V	S	G	A
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		A	R	I	L	S	G	G	S	G	G	W	M	E	W	D	R	E	I	N	N	Y	T	S	L	I	H	S	L	I	E	E	S	Q	N	Q	.	.	.	.	.	Q	E	K	N	E	Q	E	L	L	G	G	S	G	G	S
Template Known Secondary structure							S	S	S	T	T																										.	.	.	.	.										T	T				T
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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