Job Description P0ABA6 Confidence 13.02% Date Thu Jan 5 11:15:03 GMT 2012 Rank 53 Aligned Residues 88 % Identity 10% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		A	M	E	M	V	A	A	S	K	M	R	K	S	Q	D	R	M	.	A	A	S	R	P	Y	A	E	T	M	R	K	V	I	G	H	L	A	H	G	N	L	E	Y	K	H	P	Y	L	E	D	R	D	V	K	R	V	G	Y	L	V	V	S	T	D	R	G	L	C	G	G	L	N	I	N	L	F	K	K	L	L	A
Query Conservation																			.
Alig confidence																			.																																												.	.
Template Conservation																																																															.	.
Template Sequence		A	V	K	Y	L	S	Q	E	E	A	Q	A	V	D	Q	E	L	F	N	E	Y	Q	F	S	V	D	Q	L	X	E	L	A	G	L	S	C	A	T	A	I	A	K	A	Y	P	P	T	S	X	S	K	S	P	P	T	V	L	V	I	C	G	.	.	P	G	N	N	G	G	D	G	L	V	C	A	R	H	L	K	L
Template Known Secondary structure						B															S	S																							S		G	G	G	S	S	S	S	S									.	.	S	S
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	K	T	W	T	D	K	G	V	Q	C	D	L	A	M	I	G
Query Conservation
Alig confidence			.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		F	.	.	.	.	.	.	.	G	Y	Q	P	T	I	Y	Y	P	K
Template Known Secondary structure		T	.	.	.	.	.	.	.	T								S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		104								.	.	.	.	.	110	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions