Job Description Q47138 Confidence 4.13% Date Thu Jan 5 12:36:15 GMT 2012 Rank 52 Aligned Residues 61 % Identity 13% Template c2cazB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein PDBTitle: escrt-i core Resolution 3.6 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.																				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Query Sequence		L	L	Q	E	D	M	A	T	F	D	G	H	I	V	E	A	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	M	P	E	V	N	A	M	Y	P	E	L	K	L	H	A	I	G	W	V	K	H	K	C	I	P	.	.	.	.	.	.	G	A	K	W	P	E	I	Q	A	E	M
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.																			.	.	.	.	.	.
Template Conservation																																													.	.
Template Sequence		L	F	D	N	S	I	T	S	K	D	K	E	V	I	E	T	L	S	E	I	Y	S	I	V	I	T	L	D	H	V	E	K	A	Y	L	K	D	S	I	D	D	T	Q	.	.	Y	T	N	T	V	D	K	L	L	K	Q	F	K	V	Y	L	N	S	Q	N	K	E	E	I	N	K	H	F	Q	S	I	E	A	F	C
Template Known Secondary structure			S		T	T																														T	T	T	S	S					.	.																	T	S	S	S								T		S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		193	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	W	K	K	R	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	Y	N	I	T	A	S
Template Known Secondary structure				T	T				T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions