Job Description P76316 Confidence 100.00% Date Thu Jan 5 12:21:44 GMT 2012 Rank 28 Aligned Residues 294 % Identity 18% Template c3r0zA_ PDB info PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium Resolution 2.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.									.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	R	F	P	R	L	E	F	I	G	A	P	T	P	L	E	Y	L	P	R	F	S	D	Y	L	G	R	.	.	.	.	.	.	.	.	E	I	F	I	K	R	D	D	V	T	P	M	A	M	G	G	N	K	L	R	K	L	E	F	L	A	A	D	A	L	R	E	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.												.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.
Template Sequence		L	A	K	A	F	P	Q	T	G	G	M	I	E	S	D	V	V	A	I	P	A	M	Q	K	R	L	E	K	E	Y	G	Q	T	I	N	G	E	M	L	L	K	K	D	S	H	L	A	.	I	S	G	S	I	K	A	R	G	G	I	Y	E	V	L	T	H	A	E	K	L	A	L	E	A	G	L	L	T	T	D	D
Template Known Secondary structure						S	T	T																													S							G	G	G		T	.	T	T	S	B	T																					T	S			T	T	S
Template Predicted Secondary structure																																																	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
																66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	T	L	I	T	A	G	A	I	Q	S	N	H	V	R	Q	T	A	A	V	A	A	K	L	G	L	H	C	V	A	L	L	E	N	P	I	G	T	T	A	E	N	Y	L	T	N	G	N	R	L	L	L	D	L	F	N	T	Q	I	E	M	C	D	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.																																								.	.	.	.	.	.	.	.
Template Conservation																							.	.																																								.	.	.	.	.	.	.	.
Template Sequence		D	Y	S	V	L	L	S	P	E	F	K	Q	F	F	S	Q	Y	S	I	A	V	.	.	G	S	T	G	N	L	G	L	S	I	G	I	M	S	A	C	I	G	F	K	V	T	V	H	M	S	A	D	A	R	A	W	K	K	A	K	L	R	S	.	.	.	.	.	.	.	.	H	G	V	T	V	V	E	Y	E	D
Template Known Secondary structure			G	G	G	G	G	S								T	T	S					.	.			S	S														T									T	T	S											.	.	.	.	.	.	.	.	T	T							S	S
Template Predicted Secondary structure																							.	.																																								.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.
Query Sequence		L	T	D	P	N	A	Q	L	E	E	L	A	T	R	V	E	A	Q	G	F	R	P	Y	V	I	P	V	G	G	S	N	A	L	G	A	L	G	Y	V	E	S	A	L	E	I	A	Q	Q	C	.	.	.	.	.	.	E	G	A	V	N	I	S	S	V	V	V	A	S	G	S	A	G	T	H	A	G	L	A	V	G
Query Conservation																																																			.	.	.	.	.	.
Alig confidence					.	.	.																				.	.	.	.	.																				.	.	.	.	.	.
Template Conservation					.	.	.																				.	.	.	.	.
Template Sequence		D	Y	G	.	.	.	V	A	V	E	Q	G	R	K	A	A	Q	S	D	P	N	C	F	F	I	.	.	.	.	.	S	R	T	L	F	L	G	Y	A	V	A	G	Q	R	L	K	A	Q	F	A	Q	Q	G	R	V	V	D	A	S	H	P	L	F	V	Y	L	P	C	G	V	G	G	G	P	G	G	V	A	F	G
Template Known Secondary structure			T	T	.	.	.												T		T	T					.	.	.	.	.										T													T				S	S	S	S									S	S	S
Template Predicted Secondary structure					.	.	.																				.	.	.	.	.
Template SS confidence
		213	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.						.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		206	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.													.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure									.																								.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence									.																								.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		L	E	H	L	M	P	E	.	S	E	L	I	G	V	T	V	S	R	S	V	A	D	Q	L	P	K	V	V	N	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	I	A	K	E	L	E	L	T	A	S	A	E	I	.	.	L	L	W	D	D	Y	F	A	P	G	Y	G	V	P	N	D	E	G	M	E
Query Conservation									.																								.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence									.																								.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation
Template Sequence		L	K	L	A	F	G	D	N	V	H	C	F	F	A	E	P	T	H	S	P	C	M	L	L	G	V	Y	T	G	L	H	D	A	I	S	V	Q	D	I	G	I	D	N	L	T	A	A	D	G	L	A	V	G	R	A	S	G	F	V	G	R	A	M	E	R	L	L	D	G	L	Y	T	L	D	D	Q	T	M	Y	D
Template Known Secondary structure							G	G	G									T	T											S		G	G	G			S	T	T	T	T						S		G	G	G			S	S										G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.											.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	K	L	L	A	R	L	E	G	I	L	L	D	P	V	Y	T	G	K	A	M	A	G	L	I	D	G	I	S	Q	.	.	.	.	.	.	.	.	.	.	K	R	F	K	D	E	G	P	I	L	F	I	H	T	G	G	A	P
Query Conservation																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																.	.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		M	L	G	W	L	A	Q	E	E	G	I	R	L	E	P	.	S	A	L	A	G	M	A	G	P	Q	R	I	C	A	S	V	A	Y	Q	Q	R	H	G	F	S	Q	T	Q	L	G	N	A	T	H	L	V	W	A	T	G	G	G	M
Template Known Secondary structure																G	.	G	G	G	G	G	G	G															T	T								T									B		T	T
Template Predicted Secondary structure																	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions