Job Description P76316 Confidence 100.00% Date Thu Jan 5 12:21:44 GMT 2012 Rank 26 Aligned Residues 302 % Identity 22% Template c1x1qA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase beta chain; PDBTitle: crystal structure of tryptophan synthase beta chain from thermus2 thermophilus hb8 Resolution 2.50 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		E	F	I	G	A	P	T	P	L	E	Y	L	P	R	F	S	D	Y	L	.	G	R	E	I	F	I	K	R	D	D	V	T	P	M	A	M	G	G	N	K	L	R	K	L	E	F	L	A	A	D	A	L	R	E	G	A	D	T	L	I	T	A	G	A	I	Q	S	N	H	V	R	Q	T	A	A	V	A	A	K	L
Query Conservation																					.
Alig confidence																					.														.	.																												.
Template Conservation																																			.	.																												.
Template Sequence		Q	F	A	G	R	P	T	P	L	Y	H	A	K	R	L	S	E	Y	W	G	G	A	Q	V	F	L	K	R	E	D	L	L	H	.	.	T	G	A	H	K	I	N	N	T	L	G	Q	A	L	L	A	R	R	X	G	K	R	R	V	I	A	E	.	T	G	A	G	Q	H	G	V	S	V	A	T	V	A	A	L	F
Template Known Secondary structure			T	T			S														T	S	S							G	G	G	S	G	.	.	G	G	B	T	T															T								.		S	S	S
Template Predicted Secondary structure																																			.	.																												.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure									.	.	.																																														.																					.	.	.	.
Query SS confidence									.	.	.																																														.																					.	.	.	.
Query Sequence		G	L	H	C	V	A	L	.	.	.	L	E	N	P	I	G	T	T	A	E	N	Y	L	T	N	G	N	R	L	L	L	D	L	F	N	T	Q	I	E	M	C	D	A	L	T	D	P	N	A	Q	L	E	E	L	A	.	T	R	V	E	A	Q	G	F	R	P	Y	V	I	P	V	G	G	S	N	A	.	.	.	.
Query Conservation									.	.	.																																														.																					.	.	.	.
Alig confidence									.	.	.																.	.	.	.	.	.	.	.																							.																					.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.
Template Sequence		G	L	E	C	V	V	Y	X	G	E	E	D	V	R	R	Q	A	L	N	V	F	R	X	K	L	.	.	.	.	.	.	.	.	L	G	A	E	V	R	P	V	A	A	G	S	R	T	L	K	D	A	T	N	E	A	I	R	D	W	I	T	N	V	R	T	T	F	Y	I	L	G	S	V	V	G	P	H	P	Y	P
Template Known Secondary structure		T														T											.	.	.	.	.	.	.	.	T	T								S	T	T	S	S															T	T	T	T								S	S	S	S	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.									.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
			164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure		.																				.	.																												.																													.	.
Query SS confidence		.																				.	.																												.																													.	.
Query Sequence		.	L	G	A	L	G	Y	V	E	S	A	L	E	I	A	Q	Q	C	E	G	.	.	A	V	N	I	S	S	V	V	V	A	S	G	S	A	G	T	H	A	G	L	A	V	G	L	E	H	L	.	M	P	E	S	E	L	I	G	V	T	V	S	R	S	V	A	D	Q	L	P	K	V	V	N	L	Q	Q	A	.	.
Query Conservation		.																				.	.																												.																													.	.
Alig confidence		.																				.	.																												.																													.	.
Template Conservation
Template Sequence		X	X	V	R	D	F	Q	S	V	I	G	E	E	V	K	R	Q	S	L	E	L	F	G	R	L	P	D	A	L	I	A	A	V	G	G	G	S	N	A	I	G	L	F	A	P	F	A	Y	L	P	E	G	R	P	K	L	I	G	V	E	A	A	G	E	G	L	S	T	G	R	H	A	A	S	I	G	A	G	K	R
Template Known Secondary structure									T															S	S			S							S	S	S	S											T	S		T	T												T	T	S	S	S										T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
											238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	I	A	K	E	L	E	L	T	A	S	A	E	I	L	L	W	D	D	Y	F	A	P	G	Y	G	V	P	N	D	E	G	M	E	A	V	K	L	L	A	R	L	E	G	I	L	L	D	P	V	Y	T	G	K	A	M	A	G	L	I	D	G	I	S	Q	K	R	F	K	D	E	G
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																																																	.															.	.
Template Conservation																																																											.															.	.
Template Sequence		G	V	L	H	G	S	Y	X	Y	L	L	Y	D	Y	P	G	V	G	P	E	H	S	Y	Y	A	D	A	G	V	A	E	Y	A	S	V	T	D	E	E	A	L	E	G	F	K	L	L	A	R	L	E	G	I	I	P	A	L	.	E	S	A	H	A	I	A	Y	A	A	K	V	V	P	.	.	E	X	D	K	D	Q
Template Known Secondary structure					T	T					B					S	B												T	S																							S			B			.													T	T	.	.	T	S		T	T
Template Predicted Secondary structure																																																											.															.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.			.	.	.	.	.	.
		309	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		P	I	L	F	I	H	T	G	.	G	A	P	A	L	F	A	Y	H	P	H	V
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		V	V	V	I	N	L	S	G	R	G	D	K	D	V	T	E	V	X	R	L	L
Template Known Secondary structure									B	B	G	G	G	T							T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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