Job Description P42590 Confidence 3.09% Date Thu Jan 5 12:01:37 GMT 2012 Rank 27 Aligned Residues 127 % Identity 13% Template c3rkoF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	V	P	A	R	A	A	W	I	Q	F	L	I	V	I	P	L	M	I	I	P	M	L	G	S	N	T	V	Q	D	L	M	N	T	I	I	N	M	T	A	A	A	S	M	L	P	P	L	F	I	M	L	A	Y	L	N	L	R	A	K	L	D	H	L	P	R	D	F	R	M	G	S	R	R	T	G	I	I	V
Query Conservation
Alig confidence																																																							.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		H	T	N	P	V	H	A	L	L	Y	L	I	I	S	L	L	A	I	S	G	V	F	F	S	L	G	A	Y	F	A	G	A	L	E	I	I	V	Y	A	G	A	I	M	V	L	F	V	F	V	V	M	M	L	.	.	.	.	.	.	N	L	G	G	S	E	I	E	Q	E	R	Q	W	L	K	P	Q	V	W	I	G
Template Known Secondary structure				S																						T	T											T																	.	.	.	.	.	.			S	S	T	T						T	T		S
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.							.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430																			.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	M	L	I	A	I	F	A	V	G	F	V	A	S	T	F	P	T	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	L	T	I	I	F	Y	N	V	G	G	I	V	I	F	L	G	F	A	W	W	K	Y	S	K	Y	I	K	G	L	T
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	I	L	S	A	I	M	L	V	V	I	V	Y	A	I	L	G	V	N	D	Q	G	I	D	G	T	P	I	S	A	K	A	V	G	I	T	L	F	G	P	Y	V	L	A	V	E	L	A	S	M	L	L	L	A	G	L	V	V	A	F	H	V	G	R	E	E	R	A	G	E
Template Known Secondary structure																		T	T	S																				T	T	T	S																												S	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions