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Job DescriptionP42590
Confidence100.00%DateThu Jan 5 12:01:37 GMT 2012
Rank2Aligned Residues407
% Identity16%Templatec3lrcC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1)
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30..... ....40.........50.........60.........70.........80..
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Query Sequence  KRNTIGKFGLLSLTFAAVYSFNNVINNNIEL. . GLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGG
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Template Sequence  DAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALG. LSMVYAKMSFLD. PSPGGSYAYARRCFGP
Template Known Secondary structure 

SS

TTSSSSTTTTTSS



S.TT
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TTTGGGGTT
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   6...10.........20.........30.........40.........50..... ....60....... ..70.........80...
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  RWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLL
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Template Sequence  FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK. . . DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI
Template Known Secondary structure  TTTTTGGGSSSS



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   84.....90.........100.........110.........120 .........130.........140.........150.........160
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  LTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGV
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Template Sequence  PIVGIAVFGWFWFRGETYMAAWNVSGL. . . GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV
Template Known Secondary structure  S

SS
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   161........170.........180....... ..190.........200.........210.........220.........230.......
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  LYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGK
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Template Conservation   
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Template Sequence  CYVLSTTAIMGMIPNTA. . . . . . . . . . . . . . . . . . . . . . . . . GAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPP
Template Known Secondary structure  TT


S




T.........................TTTSSTTTSS
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   238.240.........250.... .....260.........270.........280.........290..
 
   323......330.........340.........350.........360.........370.........380.........390.........400..
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Query Sequence  KTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGS
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Template Sequence  IFARVNKAGTPVAGLIIVGILMTIFQLSSISP. . NATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAV
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TTSSS
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   313......320.........330.........340.... .....350.........360.........370.........380.........390
 
   403......410.........420.........430.........440.........450.........460
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Query Sequence  RRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKG
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Template Conservation    
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Template Sequence  TTIAFLYCIWAVV. . . . . . . . . . . . . . GSGAKEVMWSFVTLMVITAMYALNYNRLHKN
Template Known Secondary structure  ..............SS
TTTS




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   391........400... ......410.........420.........430....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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