Job Description P42590 Confidence 98.61% Date Thu Jan 5 12:01:37 GMT 2012 Rank 5 Aligned Residues 442 % Identity 10% Template c3dh4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus Resolution 2.70 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																															.	.	.
Query SS confidence																															.	.	.
Query Sequence		N	T	I	G	K	F	G	L	L	S	L	T	F	A	A	V	Y	S	F	N	N	V	I	N	N	N	I	E	L	.	.	.	G	L	A	S	A	P	M	F	F	L	A	T	I	F	Y	F	I	P	F	C	L	I	I	A	E	F	V	S	L	N	K	N	S	E	A	G	V	Y	A	W	V	K	S	S	L	G	G	R
Query Conservation																															.	.	.
Alig confidence																															.	.	.																		.													.	.
Template Conservation																																																			.													.	.
Template Sequence		K	S	L	P	W	W	A	V	G	A	S	L	I	A	A	N	I	S	A	E	Q	F	I	G	M	S	G	S	G	Y	S	I	G	L	A	I	A	S	Y	E	W	M	S	A	I	T	L	I	I	.	V	G	K	Y	F	L	P	I	F	I	E	K	.	.	G	I	Y	T	I	P	E	F	V	E	K	R	F	N	K	K
Template Known Secondary structure		S																	S					T									T		G	G	G														.					T							T	.	.	T			S									T
Template Predicted Secondary structure																																																			.													.	.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	F	I	T	A	Y	T	Y	W	F	V	N	L	F	F	F	T	S	L	L	P	R	V	I	A	Y	A	S	Y	A	F	L	G	Y	E	Y	I	M	T	P	V	A	T	T	I	I	S	M	V	L	F	A	F	S	T	W	V	S	T	N	G	A	K	M	L	G	P	I	T	S	V	T	S	T	L	M	L	L	L
Query Conservation
Alig confidence																																						.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.
Template Sequence		L	K	T	I	L	A	V	F	W	I	S	L	Y	I	F	V	N	L	T	S	V	L	Y	L	G	G	L	A	L	E	T	I	L	G	I	P	.	.	.	.	.	.	L	M	Y	S	I	L	G	L	A	L	F	A	L	V	Y	S	I	V	V	W	T	D	V	I	Q	V	F	F	L	V	L	G	G	F	M	T	T	Y
Template Known Secondary structure																	T																	T	T			.	.	.	.	.	.															T	T				S
Template Predicted Secondary structure																																						.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.											170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.																																																						.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.																																																						.	.
Query Sequence		T	L	S	Y	I	L	.	.	.	.	.	.	.	.	.	.	L	A	G	T	A	L	V	G	G	V	Q	P	A	D	A	I	T	V	D	A	M	I	P	N	F	N	W	A	F	L	G	V	T	T	W	I	F	M	A	A	G	G	A	E	S	V	A	V	Y	V	N	D	V	.	.	K	G	G	S	K	S	F	V	K
Query Conservation								.	.	.	.	.	.	.	.	.	.																																																						.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.																																																						.	.
Template Conservation
Template Sequence		M	A	V	S	F	I	G	G	T	D	G	W	F	A	G	V	S	K	M	V	D	A	A	P	G	H	F	E	M	I	L	D	Q	S	N	P	Q	Y	M	N	L	P	G	I	A	V	L	I	G	G	L	W	V	A	N	L	Y	Y	W	G	F	N	Q	Y	I	I	Q	R	T	L	A	A	K	S	V	S	E	A	Q	K
Template Known Secondary structure									T	T	S														G	G	G	G		S	S			S	S	S	S	G	G	G	G	S		T	T					S	T									T	T	T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.													.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	I	L	A	G	I	F	I	G	V	L	Y	S	V	S	S	V	L	I	N	V	F	.	.	.	.	.	.	.	.	.	.	.	.	V	S	S	K	E	L	K	F	T	G	G	S	V	Q	V	F	H	G	M	A	A	Y	F	G	L	P	E	A	L	M	N	R	F	V	G	L	V	S	F	T	A	M	F	G	S
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	V	F	A	A	F	L	K	L	I	V	P	F	L	V	V	L	P	G	I	A	A	Y	V	I	T	S	D	P	Q	L	M	A	S	L	G	D	I	A	A	T	N	L	P	S	A	A	N	A	D	K	A	Y	P	W	L	T	Q	F	L	P	V	G	V	K	G	V	V	F	A	A	L	A	A	A	I	V	S	S
Template Known Secondary structure													G	G	G	T	T																						T	T			S					S	S	S	G	G	G							T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	M	W	T	A	T	P	V	K	I	F	F	S	E	I	P	E	G	I	F	G	K	K	T	V	E	L	N	E	N	G	V	P	A	R	A	A	W	I	Q	F	L	I	V	I	P	L	M	I	I	P	M	L	G	S	N	T	V	Q	D	L	M	N	T	I	I	N	M	T	A	A	A	S	M	L	P	P	L	F
Query Conservation
Alig confidence														.	.	.				.
Template Conservation														.	.	.				.
Template Sequence		L	A	S	M	L	N	S	T	A	T	I	F	.	.	.	T	M	D	.	I	Y	K	E	Y	I	S	P	D	S	G	D	H	K	L	V	N	V	G	R	T	A	A	V	V	A	L	I	I	A	C	L	I	A	P	M	L	G	G	I	G	Q	A	F	Q	Y	I	Q	E	Y	T	G	L	V	S	P	G	I	L	A	V
Template Known Secondary structure														.	.	.				.	T							S		S		S	S																					G	G	G	G	G	G		S											T	T	T
Template Predicted Secondary structure														.	.	.				.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.				.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	L	A	Y	L	N	L	R	A	K	L	D	H	L	P	R	D	F	R	M	G	S	R	R	T	G	I	I	V	V	S	M	L	I	A	I	F	A	V	G	F	V	A	S	T	F	P	T	G	A	N	I	L	T	I	I	F	Y	N	V	G	G	I	V	I	F	L	G	F	A	W	W	K	Y	S	K	Y	I	K
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	L	G	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	K	K	T	T	S	K	G	A	I	I	G	V	V	A	S	I	P	F	A	L	F	L	K	F	M	P	L	S	M	P	F	M	D	Q	M	L	Y	T	L	L	F	T	M	V	V	I	A	F	T	S	L	S	T	S	I	N	D	D
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T																						T	S	S	S																									T	T		S	S	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		442	.	.	.	.	.																.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	T	A	E	E	R	H	I	E	A	T	P	A	S	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	K	G	I	S	V	T	S	S	M	F	V	T	D	R	S
Template Known Secondary structure			T	T							S						T	T
Template Predicted Secondary structure
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.