Job Description P42590 Confidence 97.76% Date Thu Jan 5 12:01:37 GMT 2012 Rank 7 Aligned Residues 378 % Identity 11% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	T	K	R	N	T	I	G	K	F	G	L	L	S	L	T	F	A	A	V	Y	S	F	N	N	V	I	N	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	L	G	L	A	S	A	P	M	F	F	L	A	T	I	F	Y	F	I	P	F	C	L	I	I	A	E	F
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																																																									.
Template Sequence		R	I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	.	V	G	L	A	I	A	Y	S
Template Known Secondary structure		S	T	T				S	S																																T			T	T	S		S	S														S										.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		V	S	L	N	K	N	S	E	A	G	V	Y	A	W	V	K	S	S	L	G	G	R	.	.	.	.	.	W	A	F	I	T	A	Y	T	Y	W	F	V	N	L	F	F	F	T	S	L	L	P	R	V	I	A	Y	A	S	Y	A	F	L	G	Y	E	Y	I	M	T	P	V	A	T	T	I	I	S	M	V	L	F	A
Query Conservation																								.	.	.	.	.
Alig confidence						.																		.	.	.	.	.
Template Conservation						.
Template Sequence		T	F	R	V	.	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L
Template Known Secondary structure		T	T	T	S	.				S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S
Template Predicted Secondary structure						.
Template SS confidence
		208	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		137	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.									.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure									.	.	.	.																									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																									.	.	.	.	.	.	.	.
Query Sequence		F	S	T	W	V	S	T	.	.	.	.	N	G	A	K	M	L	G	P	I	T	S	V	T	S	T	L	M	L	L	L	T	L	S	Y	.	.	.	.	.	.	.	.	I	L	L	A	G	T	A	L	V	G	G	V	Q	P	A	D	A	I	T	V	D	A	M	I	P	N	F	N	W	A	F	L	G	V	T	T	W
Query Conservation									.	.	.	.																									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I
Template Known Secondary structure			T	T	G	G	G	T	T	S			S																								S																									T			T	T	T	T	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		205	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		I	F	M	A	A	G	.	.	.	G	A	E	S	V	A	V	Y	V	N	D	V	K	G	G	S	K	S	F	V	K	V	I	I	L	A	G	I	F	I	G	V	L	Y	S	V	S	S	V	L	I	N	V	F	V	S	S	K	E	L	K	F	T	G	G	S	V	Q	V	F	H	G	M	A	A	Y	F	G	L	P	E
Query Conservation								.	.	.
Alig confidence								.	.	.														.	.
Template Conservation																								.	.
Template Sequence		F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	.	.	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A
Template Known Secondary structure									T	T												T	T	.	.	T																																				T						T	T		S										T
Template Predicted Secondary structure																								.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	M	N	R	F	V	G	L	V	S	F	T	A	M	F	G	S	L	L	M	W	T	A	T	P	V	K	I	F	F	S	E	I	P	E	G	I	F	G	K	K	T	V	E	L	N	E	N	G	V	P	A	R	A	A	W	I	Q	F	L	I	V	I	P	L	M	I	I	P	M	L	G	S	N	T	V	Q	D	L
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.
Template Sequence		L	P	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N
Template Known Secondary structure		S	T	T																															T	T	T	T	.	.	.	.	.	.	.	.	.		S	S																									G	G	G
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.										.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	T	I	I	N	M	T	A	A	A	S	M	L	P	P	L	F	I	M	L	A	Y	L	N	L	R	A	K	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V
Template Known Secondary structure																														T
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.