Job Description P42590 Confidence 100.00% Date Thu Jan 5 12:01:37 GMT 2012 Rank 3 Aligned Residues 441 % Identity 11% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		D	T	K	R	N	T	I	G	K	F	G	L	L	S	L	T	F	A	A	V	Y	S	F	N	N	V	I	N	N	N	I	E	L	.	.	.	G	L	A	S	A	P	M	F	F	L	A	T	I	F	Y	F	I	P	F	C	L	I	I	A	E	F	V	S	L	N	K	N	S	E	A	G	V	Y	A	W	V	K	S	S
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.																															.		.	.
Template Conservation																																																																				.		.	.
Template Sequence		R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A	I	R	W	.	G	.	.	I	N	F	T	V	A	A	R	M	P
Template Known Secondary structure			G	G	G			B															S	T										T	T	T	S																								T							.		.	.							T	T	T	T
Template Predicted Secondary structure																																																																				.		.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.			.	.	90	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	G	R	W	A	F	I	T	A	Y	T	Y	W	F	V	N	L	F	F	F	T	S	L	L	P	R	V	I	A	Y	A	S	Y	A	F	L	G	Y	E	Y	I	M	T	P	V	A	T	T	I	I	S	M	V	L	F	A	F	S	T	W	V	S	T	N	G	A	K	M	L	G	P	I	T	S	V	T	S	T	L
Query Conservation
Alig confidence																																																.	.	.
Template Conservation																																																.	.	.
Template Sequence		F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	.	.	.	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V
Template Known Secondary structure		S		T	T	T	T																																									.	.	.															T	T
Template Predicted Secondary structure																																																.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	L	L	T	L	S	Y	I	L	L	A	G	T	A	L	V	G	G	V	Q	P	A	D	A	I	T	V	D	A	M	I	P	N	F	N	W	A	F	L	G	V	T	T	W	I	F	M	A	A	G	G	A	E	S	V	A	V	Y	V	N	D	V	K	G	G	S	K	S	F	V	K	V	I	I	L	A	G	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T
Template Known Secondary structure																		T							T	T				S	S			S											T	T	T					T	T	T					T	T	B				T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	V	L	Y	S	V	S	S	V	L	I	N	V	F	V	S	S	K	E	L	K	F	T	G	G	S	V	Q	V	F	H	G	M	A	A	Y	F	G	L	P	E	A	L	M	N	R	F	V	G	L	V	S	F	T	A	M	F	G	S	L	L	M	W	T	A	T	P	V	K	I	F	F	S	E	I	P	E	G	I
Query Conservation
Alig confidence																																													.	.	.	.	.
Template Conservation																																													.	.	.	.	.
Template Sequence		A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	.	.	.	.	.	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T
Template Known Secondary structure																										S		S											T						.	.	.	.	.															T	T						T
Template Predicted Secondary structure																																													.	.	.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	K	K	T	V	E	L	N	E	N	G	V	P	A	R	A	A	W	I	Q	F	L	I	V	I	P	L	M	I	I	P	M	L	G	S	N	T	V	Q	D	L	M	N	T	I	I	N	M	T	A	A	A	S	M	L	P	P	L	F	I	M	L	A	Y	L	N	L	R	A	K	L	D	H	L	P	R	D	F	R
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	P	R	V	F	T	F	K	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R
Template Known Secondary structure		S	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.											T		G	G	G	T														T	T													T	T	S	T	T								T	B
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.														340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	S	R	R	T	G	I	I	V	V	S	M	L	I	A	I	F	A	V	G	F	V	A	S	T	F	P	T	G	A	N	I	L	T	I	I	F	Y	N	V	G	G	I	V	I	F	L	G	F	A	W	W	K	Y	S	K	Y	I	K	G	L	T	A	E	E	R	H	I	E
Query Conservation
Alig confidence																																								.	.
Template Conservation																																								.	.
Template Sequence		T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	.	.	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F	S	E	A	E	S	R	N	E	D
Template Known Secondary structure		S	S	S	T	T		T	B	T	T	B																	T		G	G	G							.	.															T	T	T	S		S			G	G	G	G	G
Template Predicted Secondary structure																																								.	.
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.			.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.