Job Description P42590 Confidence 1.32% Date Thu Jan 5 12:01:37 GMT 2012 Rank 67 Aligned Residues 191 % Identity 8% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	F	I	G	V	L	Y	S	V	S	S	V	L	I	N	V	F	V	S	S	K	E	L	K	F	T	G	G	S	V	Q	V	F	H	G	M	A	A	Y	F	G	L	P	E	A	L	M	N	R	F	V	G	L	V	S	F	T	A	M	F	G	S	L	L	M	W	T	A	T	P	V	K	I	F	F	S	E	I	P
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	.	.	.	.	.	.	.	.	.	.	.	.	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	S	S	T	T																			T	T						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.													30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	I	F	G	K	K	T	V	E	L	N	E	N	G	V	P	A	R	A	A	W	I	Q	F	L	I	V	I	P	L	M	I	I	P	M	L	G	S	N	T	V	Q	D	L	M	N	T	I	I	N	M	T	A	A	A	S	M	L	P	P	L	F	I	M	L	A	Y	L	N	L	R	A	K	L	D	H	L	P	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L	V	A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																																																									T	S	S	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																															.	.	.	.	.	.
Template SS confidence
														68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	R	M	G	S	R	R	T	G	I	I	V	V	S	M	L	I	A	I	F	A	V	G	F	V	A	S	T	F	P	T	G	A	N	I	L	T	I	I	F	Y	N	V	G	G	I	V	I	F	L	G	F	A	W	W	K	Y	S	K	Y	I	K	G	L	T	A	E	E	R	H	I	E	A	T	P
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y
Template Known Secondary structure		.	.	.	.	.			S																							S	S																										S	S				S	T	T	T						T	T	T		S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions