Job Description P77296 Confidence 96.27% Date Thu Jan 5 12:27:23 GMT 2012 Rank 27 Aligned Residues 160 % Identity 11% Template c3mkrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	A	I	T	C	I	S	Q	P	K	K	T	T	L	R	D	K	A	M	V	N	Y	A	F	D	Y	L	S	S	P	G	S	L	P	F	T	T	A	A	T	E	L	S	A	I	H	G	H	S	T	S	Q	Y	R	L	G	E	F	Y	L	H	G	S	D	G	K	P	L	D	Y	T	Q	A	R	Y	W	Y	E	Q
Query Conservation
Alig confidence																															.														.	.	.	.	.	.
Template Conservation																															.														.	.	.	.	.	.
Template Sequence		V	A	E	L	D	R	E	M	S	R	S	V	D	V	T	N	T	T	F	L	L	M	A	A	S	I	Y	F	Y	.	D	Q	N	P	D	A	A	L	R	T	L	H	Q	.	.	.	.	.	.	G	D	S	L	E	C	M	A	M	T	V	Q	I	L	L	K	L	D	R	L	D	L	A	R	K	E	L	K	K	M	Q
Template Known Secondary structure											S					S															.	T	T										T	T	.	.	.	.	.	.			S														T	T
Template Predicted Secondary structure																															.														.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		S	A	E	Q	E	N	P	R	A	Q	S	K	L	G	W	I	Y	L	K	G	L	G	V	K	P	D	T	R	K	A	I	L	W	Y	K	E	A	A	E	Q	G	Y	A	H	A	Q	Y	T	L	G	L	I	Y	R	N	G	S	G	I	N	V	N	H	Y	E	S	Q	K	W	L	K	L	T	A	K	Q	.	.	H	Y
Query Conservation																																																																														.	.
Alig confidence																																																									.	.	.	.																		.	.
Template Conservation																																																									.	.	.	.
Template Sequence		D	Q	D	E	D	A	T	L	T	Q	L	A	T	A	W	V	S	L	A	A	G	G	E	K	L	Q	D	A	Y	Y	I	F	Q	E	M	A	D	K	C	S	P	T	L	L	L	L	N	G	Q	A	A	C	H	M	A	.	.	.	.	Q	G	R	W	E	A	A	E	G	V	L	Q	E	A	L	D	K	D	S	G	H
Template Known Secondary structure					T	T																	T	T																S																	.	.	.	.	T	T																	T	T
Template Predicted Secondary structure																																																									.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	A	E	R	L	L	A	G	L	P	A	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	E	T	L	I	N	L	V	V	L	S	Q	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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