Job Description P0ABI8 Confidence 100.00% Date Thu Jan 5 11:15:34 GMT 2012 Rank 8 Aligned Residues 464 % Identity 20% Template d1xmea1 SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 2.30

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		D	H	K	R	L	G	I	M	Y	I	I	V	A	I	V	M	L	L	R	G	F	A	D	A	I	M	M	R	S	Q	Q	A	L	A	S	A	G	E	.	.	.	A	G	F	L	P	P	H	H	Y	D	Q	I	F	T	A	H	G	V	I	M	I	F	F	V	A	M	P	F	V	I	G	L	M	N	L	V	V	P	L
Query Conservation																																								.	.	.
Alig confidence																																								.	.	.
Template Conservation
Template Sequence		P	E	K	K	A	T	L	Y	F	L	V	L	G	F	L	A	L	I	V	G	S	L	F	G	P	F	Q	A	L	N	Y	G	N	V	D	A	Y	P	L	L	K	R	L	L	P	F	V	Q	S	Y	Y	Q	G	L	T	L	H	G	V	L	N	A	I	V	F	T	Q	L	F	A	Q	A	I	M	V	Y	L	P	A	R
Template Known Secondary structure		T																					T									T	T	T											S	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	G	A	R	D	V	A	F	P	F	L	N	N	L	S	F	W	F	T	V	V	G	V	I	L	V	N	V	S	L	G	V	G	E	F	A	Q	T	G	W	L	A	Y	P	P	L	S	G	I	E	Y	S	P	G	V	G	V	D	Y	W	I	W	S	L	Q	L	S	G	I	G	T	T	L	T	G	I	N	F	F
Query Conservation
Alig confidence									.	.																												.															.	.	.	.	.	.	.	.
Template Conservation									.	.																												.															.	.	.	.	.	.	.	.
Template Sequence		E	L	N	M	R	P	N	.	.	M	G	L	M	W	L	S	W	W	M	A	F	I	G	L	V	V	A	A	L	P	L	L	A	N	E	A	.	T	V	L	Y	T	F	Y	P	P	L	K	G	H	W	.	.	.	.	.	.	.	.	A	F	Y	L	G	A	S	V	F	V	L	S	T	W	V	S	I	Y	I	V	L
Template Known Secondary structure				T					.	.																								T	T	S		.		S	T	T	T	T		T	T	B					.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.																												.															.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.									.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	L	K	M	R	A	P	G	M	T	M	F	K	M	P	V	F	T	W	A	S	L	C	A	N	V	L	I	I	A	S	F	P	I	L	T	V	T	V	A	L	L	T	L	D	R	Y	L	G	T	H	F	F	T	N	D	M	G	G	N	M	M	M	Y	I	N	L	I	W	A	W	G	H	P	E	V	Y	I
Query Conservation
Alig confidence														.																																								.	.	.	.	.
Template Conservation														.																																								.	.	.	.	.
Template Sequence		D	L	W	R	R	W	K	A	A	N	P	G	.	K	V	T	P	L	V	T	Y	M	A	V	V	F	W	L	M	W	F	L	A	S	L	G	L	V	L	E	A	V	L	F	L	L	P	W	S	F	G	L	.	.	.	.	.	V	E	G	V	D	P	L	V	A	R	T	L	F	W	W	T	G	H	P	I	V	Y	F
Template Known Secondary structure										S	S	T	T	.																															T							T	S	.	.	.	.	.		S																T
Template Predicted Secondary structure														.																																								.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		L	I	L	P	V	F	G	V	F	S	E	I	A	A	T	F	S	R	K	R	L	F	G	Y	T	S	L	V	W	A	T	V	C	I	T	V	L	S	F	I	V	W	L	H	H	F	F	T	M	.	G	A	G	A	N	V	N	A	F	F	G	I	T	T	M	I	I	A	I	P	T	G	V	K	I	F	N	W	L	F
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		W	L	L	P	A	Y	A	I	I	Y	T	I	L	P	K	Q	A	G	G	K	L	V	S	D	P	M	A	R	L	A	F	L	L	F	L	L	L	S	T	P	V	G	F	H	H	Q	F	A	D	P	G	I	D	P	T	W	K	M	I	H	S	V	L	T	L	F	V	A	V	P	S	L	M	T	A	F	T	V	A	A
Template Known Secondary structure													T						T	S		B	S																S	S	T	T	G	G	G	G		T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		369	370	.	.	.	.																.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	M	Y	Q	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	V	F	H	S	A	M	L	W	T	I	G	F	I	V	T	F	S	V	G	G	M	T	G	V	L	L	A	V	P	G	A	D	F	V	L	H	N	S	L	F	L	I	A	H	F	H	N	V	I	I	G	G	V	V	F	G	C	F
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	E	F	A	G	R	L	R	G	G	R	G	L	F	G	W	I	R	A	L	P	W	D	N	P	A	F	V	A	P	V	L	G	L	L	G	F	I	P	G	G	A	G	G	I	V	N	A	S	F	T	L	D	Y	V	V	H	N	T	A	W	V	P	G	H	F	H	L	Q	V	A	S	L	V	T	L	T	A	M
Template Known Secondary structure										T	T			S	T	T						S		T	T																									T	S	G	G	G					T	T	B	T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450				.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.					.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																																						.	.	.	.
Query SS confidence																			.	.	.																																						.	.	.	.
Query Sequence		A	G	M	T	Y	W	W	P	K	A	F	G	F	K	L	N	E	.	.	.	T	W	G	K	R	A	F	W	F	W	I	I	G	F	F	V	A	F	M	P	L	Y	A	L	G	F	M	G	M	T	R	R	L	S	Q	Q	I	.	.	.	.	D	P	Q	F	H	T	M	L	M	I	A	A	S	G	A	V	L	I	A
Query Conservation																			.	.	.																																						.	.	.	.
Alig confidence																			.	.	.																																						.	.	.	.
Template Conservation
Template Sequence		G	S	L	Y	W	L	L	P	N	L	T	G	K	P	I	S	D	A	Q	R	R	L	G	L	A	V	V	W	L	W	F	L	G	M	M	I	M	A	V	G	L	H	W	A	G	L	L	N	V	P	R	R	A	Y	I	A	Q	V	P	D	A	Y	P	H	A	A	V	P	M	V	F	N	V	L	A	G	I	V	L	L
Template Known Secondary structure			T																																													T	T		B	S	S			G	G	G	S	G	G	G		G	G	G
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	I	L	C	L	V	I	Q	M	Y	V	S	I	R	D	R	D	Q	N	R	D	L	T	G	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	L	L	L	F	I	Y	G	L	F	S	V	L	L	S	R	E	R	K	P	E	L	A	E	A	P
Template Known Secondary structure																T										S	S
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.