Job Description P0ABI8 Confidence 100.00% Date Thu Jan 5 11:15:34 GMT 2012 Rank 3 Aligned Residues 510 % Identity 39% Template d1v54a_ SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 1.80

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		W	K	E	W	L	T	S	V	D	H	K	R	L	G	I	M	Y	I	I	V	A	I	V	M	L	L	R	G	F	A	D	A	I	M	M	R	S	Q	Q	A	L	A	S	A	G	E	A	G	F	L	P	P	H	H	Y	D	Q	I	F	T	A	H	G	V	I	M	I	F	F	V	A	M	P	F	V	I	.	G	L	M
Query Conservation																																																																														.
Alig confidence																																													.	.	.																															.
Template Conservation																																													.	.	.
Template Sequence		I	N	R	W	L	F	S	T	N	H	K	D	I	G	T	L	Y	L	L	F	G	A	W	A	G	M	V	G	T	A	L	S	L	L	I	R	A	E	L	G	Q	P	G	.	.	.	T	L	L	G	D	D	Q	I	Y	N	V	V	V	T	A	H	A	F	V	M	I	F	F	M	V	M	P	I	M	I	G	G	F	G
Template Known Secondary structure						T	S																																		S	S	S	S	.	.	.		S	S		S																		T	T						T	T
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	V	V	P	L	Q	I	G	A	R	D	V	A	F	P	F	L	N	N	L	S	F	W	F	T	V	V	G	V	I	L	V	N	V	S	L	G	V	G	E	F	A	Q	T	G	W	L	A	Y	P	P	L	S	G	I	E	Y	S	P	G	V	G	V	D	Y	W	I	W	S	L	Q	L	S	G	I	G	T	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	W	L	V	P	L	M	I	G	A	P	D	M	A	F	P	R	M	N	N	M	S	F	W	L	L	P	P	S	F	L	L	L	L	A	S	S	M	V	E	A	G	A	G	T	G	W	T	V	Y	P	P	L	A	G	N	L	A	H	A	G	A	S	V	D	L	T	I	F	S	L	H	L	A	G	V	S	S	I	L
Template Known Secondary structure									T	T		S	S		S	S										T														S	T	T				S	T	T	T	T		T	T	T	T	S	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	I	N	F	F	V	T	I	L	K	M	R	A	P	G	M	T	M	F	K	M	P	V	F	T	W	A	S	L	C	A	N	V	L	I	I	A	S	F	P	I	L	T	V	T	V	A	L	L	T	L	D	R	Y	L	G	T	H	F	F	T	N	D	M	G	G	N	M	M	M	Y	I	N	L	I	W	A	W	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	I	N	F	I	T	T	I	I	N	M	K	P	P	A	M	S	Q	Y	Q	T	P	L	F	V	W	S	V	M	I	T	A	V	L	L	L	L	S	L	P	V	L	A	A	G	I	T	M	L	L	T	D	R	N	L	N	T	T	F	F	D	P	A	G	G	G	D	P	I	L	Y	Q	H	L	F	W	F	F	G
Template Known Secondary structure													S	S		T	T			G	G	G	S																																		S				S	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		H	P	E	V	Y	I	L	I	L	P	V	F	G	V	F	S	E	I	A	A	T	F	S	.	R	K	R	L	F	G	Y	T	S	L	V	W	A	T	V	C	I	T	V	L	S	F	I	V	W	L	H	H	F	F	T	M	G	A	G	A	N	V	N	A	F	F	G	I	T	T	M	I	I	A	I	P	T	G	V	K
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		H	P	E	V	Y	I	L	I	L	P	G	F	G	M	I	S	H	I	V	T	Y	Y	S	G	K	K	E	P	F	G	Y	M	G	M	V	W	A	M	M	S	I	G	F	L	G	F	I	V	W	A	H	H	M	F	T	V	G	M	D	V	D	T	R	A	Y	F	T	S	A	T	M	I	I	A	I	P	T	G	V	K
Template Known Secondary structure																								T	T		S	S		T	T															T	T	S		G	G	G	G		T	T	S																	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	N	W	L	F	T	M	Y	Q	G	R	I	V	F	H	S	A	M	L	W	T	I	G	F	I	V	T	F	S	V	G	G	M	T	G	V	L	L	A	V	P	G	A	D	F	V	L	H	N	S	L	F	L	I	A	H	F	H	N	V	I	I	G	G	V	V	F	G	C	F	A	G	M	T	Y	W	W	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	S	W	L	A	T	L	H	G	G	N	I	K	W	S	P	A	M	M	W	A	L	G	F	I	F	L	F	T	V	G	G	L	T	G	I	V	L	A	N	S	S	L	D	I	V	L	H	D	T	Y	Y	V	V	A	H	F	H	Y	V	L	S	M	G	A	V	F	A	I	M	G	G	F	V	H	W	F	P	L
Template Known Secondary structure										T	T																																							T	T	B												T	T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	G	F	K	L	N	E	T	W	G	K	R	A	F	W	F	W	I	I	G	F	F	V	A	F	M	P	L	Y	A	L	G	F	M	G	M	T	R	R	L	S	Q	Q	I	D	P	Q	F	H	T	M	L	M	I	A	A	S	G	A	V	L	I	A	L	G	I	L	C	L	V	I	Q	M	Y	V	S	I	R	D
Query Conservation
Alig confidence																																															.
Template Conservation																																															.
Template Sequence		F	S	G	Y	T	L	N	D	T	W	A	K	I	H	F	A	I	M	F	V	G	V	N	M	T	F	F	P	Q	H	F	L	G	L	S	G	M	P	R	R	Y	S	D	Y	P	.	D	A	Y	T	M	W	N	T	I	S	S	M	G	S	F	I	S	L	T	A	V	M	L	M	V	F	I	I	W	E	A	F	A	S
Template Known Secondary structure				S	B																							T								T	T		B	T	T		S	S			.	G	G	G
Template Predicted Secondary structure																																															.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	Q	N	R	D	L	T	G	D	P	W	G	G	R	T	L	E	W	A	T	S	S	P	P	P	F	Y	N	F	A	V	V	P	H	V	H	E	R
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		K	R	E	.	.	.	V	L	T	V	D	L	T	T	T	N	L	E	W	L	N	G	C	P	P	P	Y	H	T	F	E	E	P	T	Y	V	N	L	K
Template Known Secondary structure				B	.	.	.					T	T	G	G	G		G	G	G	T	T		S	S			S	S			S	S
Template Predicted Secondary structure					.	.	.
Template SS confidence
		479	480	.				.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.