Job Description P0ABI8 Confidence 100.00% Date Thu Jan 5 11:15:34 GMT 2012 Rank 4 Aligned Residues 505 % Identity 39% Template d1ar1a_ SCOP info Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit I-like Resolution 2.70

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.															.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	K	E	W	L	T	S	V	D	H	K	R	L	G	I	M	Y	I	I	V	A	I	V	M	L	L	R	G	F	A	D	A	I	M	M	R	S	Q	Q	A	L	A	S	A	G	E	A	G	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	H	H	Y	D	Q	I	F	T	A	H	G	V	I	M
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	R	W	F	M	S	T	N	H	K	D	I	G	I	L	Y	L	F	T	A	G	I	V	G	L	I	S	V	C	F	T	V	Y	M	R	M	E	L	Q	H	P	G	V	Q	Y	M	C	L	E	G	A	R	L	I	A	D	A	S	A	E	C	T	P	N	G	H	L	W	N	V	M	I	T	Y	H	G	V	L	M
Template Known Secondary structure		T	T	T	T	T	T																																			S	S	S		S	S	S	B	T	T				S	S			S	S	S				B
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure												.																																														.	.	.	.	.
Query SS confidence												.																																														.	.	.	.	.
Query Sequence		I	F	F	V	A	M	P	F	V	I	.	G	L	M	N	L	V	V	P	L	Q	I	G	A	R	D	V	A	F	P	F	L	N	N	L	S	F	W	F	T	V	V	G	V	I	L	V	N	V	S	L	G	V	G	E	F	.	.	.	.	.	A	Q	T	G	W	L	A	Y	P	P	L	S	G	I	E	Y	S	P	G
Query Conservation												.																																														.	.	.	.	.
Alig confidence												.																																														.	.	.	.	.																.	.
Template Conservation																																																																														.	.
Template Sequence		M	F	F	V	V	I	P	A	L	F	G	G	F	G	N	Y	F	M	P	L	H	I	G	A	P	D	M	A	F	P	R	L	N	N	L	S	Y	W	M	Y	V	C	G	V	A	L	G	V	A	S	L	L	A	P	G	G	N	D	Q	M	G	S	G	V	G	W	V	L	Y	P	P	L	S	T	T	E	.	.	A	G
Template Known Secondary structure					T						T	T	T											T		S	S		S																									S			T	T	T			S			S	T	T	T	T		T	T	T	G	G	G		.	.	S	S
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	V	D	Y	W	I	W	S	L	Q	L	S	G	I	G	T	T	L	T	G	I	N	F	F	V	T	I	L	K	M	R	A	P	G	M	T	M	F	K	M	P	V	F	T	W	A	S	L	C	A	N	V	L	I	I	A	S	F	P	I	L	T	V	T	V	A	L	L	T	L	D	R	Y	L	G	T	H	F	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	S	M	D	L	A	I	F	A	V	H	V	S	G	A	S	S	I	L	G	A	I	N	I	I	T	T	F	L	N	M	R	A	P	G	M	T	L	F	K	V	P	L	F	A	W	S	V	F	I	T	A	W	L	I	L	L	S	L	P	V	L	A	G	A	I	T	M	L	L	M	D	R	N	F	G	T	Q	F	F
Template Known Secondary structure		S																													S	S			T	T			G	G	G	S																																		S				T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	D	M	G	G	N	M	M	M	Y	I	N	L	I	W	A	W	G	H	P	E	V	Y	I	L	I	L	P	V	F	G	V	F	S	E	I	A	A	T	F	S	R	K	R	L	F	G	Y	T	S	L	V	W	A	T	V	C	I	T	V	L	S	F	I	V	W	L	H	H	F	F	T	M	G	A	G	A	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	A	G	G	G	D	P	V	L	Y	Q	H	I	L	W	F	F	G	H	P	E	V	Y	I	I	I	L	P	G	F	G	I	I	S	H	V	I	S	T	F	A	K	K	P	I	F	G	Y	L	P	M	V	L	A	M	A	A	I	G	I	L	G	F	V	V	W	A	H	H	M	Y	T	A	G	M	S	L	T	Q
Template Known Secondary structure			G	G	G	T																																						T	S			T	T															T	T	S		G	G	G	G		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	F	F	G	I	T	T	M	I	I	A	I	P	T	G	V	K	I	F	N	W	L	F	T	M	Y	Q	G	R	I	V	F	H	S	A	M	L	W	T	I	G	F	I	V	T	F	S	V	G	G	M	T	G	V	L	L	A	V	P	G	A	D	F	V	L	H	N	S	L	F	L	I	A	H	F	H	N	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	Y	F	M	L	A	T	M	T	I	A	V	P	T	G	I	K	V	F	S	W	I	A	T	M	W	G	G	S	I	E	F	K	T	P	M	L	W	A	F	G	F	L	F	L	F	T	V	G	G	V	T	G	V	V	L	S	Q	A	P	L	D	R	V	Y	H	D	T	Y	Y	V	V	A	H	F	H	Y	V	M
Template Known Secondary structure												T																	S	S																														S								T	T	B
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	V	V	F	G	C	F	A	G	M	T	Y	W	W	P	K	A	F	G	F	K	L	N	E	T	W	G	K	R	A	F	W	F	W	I	I	G	F	F	V	A	F	M	P	L	Y	A	L	G	F	M	G	M	T	R	R	L	S	Q	Q	I	D	P	Q	F	H	T	M	L	M	I	A	A	S	G	A	V	L
Query Conservation
Alig confidence																																																																	.
Template Conservation																																																																	.
Template Sequence		S	L	G	A	V	F	G	I	F	A	G	V	Y	Y	W	I	G	K	M	S	G	R	Q	Y	P	E	W	A	G	Q	L	H	F	W	M	M	F	I	G	S	N	L	I	F	F	P	Q	H	F	L	G	R	Q	G	M	P	R	R	Y	I	D	Y	P	.	V	E	F	A	Y	W	N	N	I	S	S	I	G	A	Y	I
Template Known Secondary structure		T	T	T																		S																								S								T	T		B	S	S		S				.	G	G	G
Template Predicted Secondary structure																																																																	.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.			.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		I	A	L	G	I	L	C	L	V	I	Q	M	Y	V	S	I	R	D	R	D	Q	N	R	D	L	T	G	D	P	W	G	.	.	G	R	T	L	E	W	A	T	S	S	P	P	P	F	Y	N	F	A	V
Query Conservation																																	.	.
Alig confidence																										.	.						.	.
Template Conservation																										.	.
Template Sequence		S	F	A	S	F	L	F	F	I	G	I	V	F	Y	T	L	F	A	G	K	R	V	N	V	.	.	P	N	Y	W	N	E	H	A	D	T	L	E	W	T	L	P	S	P	P	P	E	H	T	F	E	T
Template Known Secondary structure																				S					S	.	.	S		S	S		T	T			S	G	G	G	T	S		S	S			S	S		S
Template Predicted Secondary structure																										.	.
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.			520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.