Job Description P0ABI8 Confidence 100.00% Date Thu Jan 5 11:15:34 GMT 2012 Rank 10 Aligned Residues 428 % Identity 15% Template c3o0rB_ PDB info PDB header:immune system/oxidoreductase Chain: B: PDB Molecule:nitric oxide reductase subunit b; PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment Resolution 2.70 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	K	R	L	G	I	M	Y	I	I	V	A	I	V	M	L	L	R	G	F	A	D	A	I	M	M	R	S	Q	Q	A	L	A	S	A	G	E	A	G	F	L	P	P	H	H	Y	D	Q	I	F	T	A	H	G	V	I	M	I	F	F	V	A	M	P	F	V	I	G	L	M	N	L	V	V	P	L	Q	I	G
Query Conservation
Alig confidence																																					.	.	.	.																						.
Template Conservation																																					.	.	.	.																						.
Template Sequence		A	S	Q	A	V	A	K	P	Y	F	V	F	A	L	I	L	F	V	G	Q	I	L	F	G	L	I	M	G	L	Q	Y	V	V	G	D	.	.	.	.	F	L	F	P	A	I	P	F	N	V	A	R	M	V	H	T	N	L	L	I	V	.	W	L	L	F	G	F	M	G	A	A	Y	Y	L	V	P	E	E	S	D
Template Known Secondary structure		G	G	G	G	G																										T	T	S	T	T	.	.	.	.	T	T	T	T	T	S																.																			T
Template Predicted Secondary structure																																					.	.	.	.																						.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	D	V	A	F	P	F	L	N	N	L	S	F	W	F	T	V	V	G	V	I	L	V	N	V	S	L	G	V	G	E	F	A	Q	T	G	W	L	A	Y	P	P	L	S	G	I	E	Y	S	P	G	V	G	V	D	Y	W	I	W	S	L	Q	L	S	G	I	G	T	T	L	T	G	I	N	F	F	V	T	I
Query Conservation
Alig confidence		.																																													.	.
Template Conservation		.																																													.	.
Template Sequence		.	C	E	L	Y	S	P	K	L	A	W	I	L	F	W	V	F	A	A	A	G	V	L	T	I	L	G	Y	L	L	V	P	Y	A	G	L	A	R	L	T	G	N	E	L	W	.	.	P	T	M	G	R	E	F	L	E	Q	P	T	I	S	K	A	G	I	V	I	V	A	L	G	F	L	F	N	V	G	M	T	V
Template Known Secondary structure		.	S			S																										S									T	T	G	G	G	S	.	.				S	B	T	T	B		S
Template Predicted Secondary structure		.																																													.	.
Template SS confidence
			86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		L	K	M	R	A	P	G	M	T	M	F	K	M	P	V	F	T	W	A	S	L	C	A	N	V	L	I	I	A	S	F	P	I	L	T	V	T	V	A	L	L	T	L	D	R	Y	L	G	T	H	F	F	T	N	D	M	G	G	N	M	M	M	Y	I	N	L	I	W	A	W	G	H	P	E	V	Y	.	I	L	I
Query Conservation																																																																														.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	G	R	K	T	A	I	S	M	V	L	M	T	G	L	I	G	L	A	L	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	S	F	Y	N	P	E	N	L	T	R	D	K	F	Y	W	W	W	V	V	H	L	W	V	E	G	V	W	E
Template Known Secondary structure			S	S																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G				S	S																	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																												.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		L	P	V	F	G	V	F	S	E	I	A	A	T	F	S	R	.	.	K	R	L	F	G	Y	T	S	L	V	W	A	T	V	C	I	T	V	L	S	F	I	V	W	L	H	H	F	F	T	M	G	A	G	A	N	V	N	A	F	F	G	I	T	T	M	I	I	A	I	P	T	G	V	K	I	F	N	W	L	F	T
Query Conservation																		.	.
Alig confidence																		.	.																						.
Template Conservation																																									.
Template Sequence		L	I	M	G	A	I	L	A	F	V	L	V	K	I	T	G	V	D	R	E	V	I	E	K	W	L	Y	V	I	I	A	M	A	L	I	S	G	I	I	.	G	T	G	H	H	Y	F	W	I	G	V	P	G	Y	W	L	W	L	G	S	V	F	S	A	L	E	P	L	P	F	F	A	M	V	L	F	A	F	N	T
Template Known Secondary structure																																									.		G	G	G	G	G	S	S	S	S	S		T													T
Template Predicted Secondary structure																																									.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure										.	.											.
Query SS confidence										.	.											.
Query Sequence		M	Y	Q	G	R	I	V	F	.	.	H	S	A	M	L	W	T	I	G	F	.	I	V	T	F	S	V	G	G	M	T	G	V	L	L	A	V	P	G	A	D	F	V	L	H	N	S	L	F	L	I	A	H	F	H	N	V	I	I	G	G	V	V	F	G	C	F	A	G	M	T	Y	W	W	P	K	A	F	G	F
Query Conservation										.	.											.
Alig confidence										.	.											.
Template Conservation
Template Sequence		I	N	R	R	R	R	D	Y	P	N	R	A	V	A	L	W	A	M	G	T	T	V	M	A	F	L	G	A	G	V	W	G	F	M	H	T	L	A	P	V	N	Y	Y	T	H	G	T	Q	L	T	A	A	H	G	H	M	A	F	Y	G	A	Y	A	M	I	V	M	T	I	I	S	Y	A	M	P	R	L	R	G	I
Template Known Secondary structure		T	T	S		S	S			S																			T							T	T	S								T	T	S																											T	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		447						.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.										.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure			.	.	.	.	.																																										.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.																																										.	.	.	.	.	.	.	.	.
Query Sequence		K	.	.	.	.	.	L	N	E	T	W	G	K	R	A	F	W	F	W	I	I	G	F	F	V	A	F	M	P	L	Y	A	L	G	F	M	G	M	T	R	R	L	S	Q	Q	I	D	.	.	.	.	.	.	.	.	.	P	Q	F	H	T	M	L	M	I	A	A	S	G	A	V	L	I	A	L	G	I	L	C	L
Query Conservation			.	.	.	.	.																																										.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.																																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	A	M	D	N	R	S	Q	V	L	E	M	W	G	F	W	L	M	T	V	A	M	V	F	I	T	L	F	L	S	A	A	G	V	L	Q	V	W	L	Q	R	M	P	A	D	G	A	A	M	T	F	M	A	T	Q	D	Q	L	A	I	F	Y	W	L	R	E	G	A	G	V	V	F	L	I	G	L	V	A	Y
Template Known Secondary structure			S	S																																						T	T	S	S		T	T	T	S										T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		513	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	Q	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	S	F
Template Known Secondary structure				T
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.