Job Description P0ABI8 Confidence 100.00% Date Thu Jan 5 11:15:34 GMT 2012 Rank 9 Aligned Residues 449 % Identity 14% Template c3mk7K_ PDB info PDB header:oxidoreductase Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n; PDBTitle: the structure of cbb3 cytochrome oxidase Resolution 3.20 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	V	D	H	K	R	L	G	I	M	Y	I	I	V	A	I	V	M	L	L	R	G	F	A	D	A	I	M	M	R	S	Q	Q	A	L	A	S	A	G	E	A	G	F	L	P	P	H	H	Y	D	Q	I	F	T	A	H	G	V	I	M	I	F	F	V	A	M	P	F	V	I	G	L	M	N	L	V	V	P	L
Query Conservation
Alig confidence							.																																	.	.
Template Conservation							.																																	.	.
Template Sequence		T	A	Y	S	Y	.	K	V	V	R	Q	F	A	I	M	T	V	V	W	G	I	V	G	M	G	L	G	V	F	I	A	A	Q	L	A	W	P	F	.	.	L	N	F	D	L	P	W	T	S	F	G	R	L	R	P	L	H	T	N	A	V	I	F	A	F	G	G	C	A	L	F	A	T	S	Y	Y	S	V	Q	R
Template Known Secondary structure			S				.																															G	G	.	.	G	G	T	T		T	T	T	S														T	T
Template Predicted Secondary structure							.																																	.	.
Template SS confidence
		7	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	G	A	R	D	V	A	F	P	F	L	N	N	L	S	F	W	F	T	V	V	G	V	I	L	V	N	V	S	L	G	V	G	E	F	A	Q	T	G	W	L	A	Y	P	P	L	S	G	I	E	Y	S	P	G	V	G	V	D	Y	W	I	W	S	L	Q	L	S	G	I	G	T	T	L	T	G	I	N	F	F
Query Conservation
Alig confidence							.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	C	Q	T	T	.	L	F	A	P	K	L	A	A	F	T	F	W	G	W	Q	L	V	I	L	L	A	A	I	S	L	P	L	G	F	T	S	S	K	E	Y	A	E	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	P	I	D	I	L	I	T	I	V	W	V	A	Y	A	V	V	F	F
Template Known Secondary structure				T	S		.		S	S																						T	T	T	T		B				T	T			B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	L	K	M	R	A	P	G	M	T	M	F	K	M	P	V	F	T	W	A	S	L	C	A	N	V	L	I	I	A	S	F	P	I	L	T	V	T	V	A	L	L	T	L	D	R	Y	L	G	T	H	F	F	T	N	D	M	G	G	N	M	M	M	Y	I	N	L	I	W	A	W	G	H	P	E	V	Y	I
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	L	A	K	R	K	V	K	H	I	Y	V	G	N	W	F	F	G	A	F	I	L	T	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	H	V	V	N	N	L	E	I	P	V	T	A	M	K	S	Y	S	L	Y	A	G	A	T	D	A	M	V	Q	W	W	Y	G	H	N	A	V	G	F	F
Template Known Secondary structure						T		S	S	S	S																	.	.	.	.	.	.	.	.	.	.	.	.	.							T							T	T					S																					T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.														.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	L	P	V	F	G	V	F	S	E	I	A	A	T	F	S	R	K	R	L	F	G	Y	T	S	L	V	W	A	T	V	C	I	T	V	L	S	F	I	V	W	L	H	H	F	F	T	M	G	A	G	A	N	V	N	A	F	F	G	I	T	T	M	I	I	A	I	P	T	G	V	K	I	F	N	W	L	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	A	G	F	L	G	I	M	Y	Y	F	V	P	K	Q	A	E	R	P	V	Y	S	Y	R	L	S	I	V	H	F	W	A	L	I	T	V	Y	I	W	A	G	P	H	H	L	H	Y	T	A	L	P	D	W	A	Q	S	L	G	M	V	M	S	L	I	L	L	A	P	S	W	G	G	M	I	N	G	M	M	T
Template Known Secondary structure		T	T																T				S																			T	G	G	G	S	S	T	T	S	S	S															T													G	G
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		370	.	.			.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		M	Y	Q	.	.	G	R	I	V	F	H	S	A	M	L	W	T	I	G	F	I	V	T	F	S	V	G	G	M	T	G	V	L	L	A	V	P	G	A	D	F	V	L	H	N	S	L	F	L	I	A	H	F	H	N	V	I	I	G	G	V	V	F	G	C	F	A	G	M	T	Y	W	W	P	K	A	F	G	F	K
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		L	S	G	A	W	H	K	L	R	S	D	P	I	L	R	F	L	V	V	S	L	A	F	Y	G	M	S	T	F	E	G	P	M	M	A	I	K	T	V	N	A	L	S	H	Y	T	D	W	T	I	G	H	V	H	A	G	A	L	G	W	V	A	M	V	S	I	G	A	L	Y	H	L	V	P	K	V	F	G	R	E
Template Known Secondary structure		G	T	T	G	G	G																													T	S								T	T	S														T																	T	T		S
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		448			.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.												.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure			.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	.	.	N	E	T	W	G	K	R	A	F	W	F	W	I	I	G	F	F	V	A	F	M	P	L	Y	A	L	G	F	M	G	M	T	R	R	L	S	Q	Q	I	D	.	.	.	.	.	.	.	.	.	.	.	P	Q	F	H	T	M	L	M	I	A	A	S	G	A	V	L	I	A	L	G	I	L	C	L	V	I
Query Conservation			.	.																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	M	H	S	I	G	L	I	N	T	H	F	W	L	A	T	I	G	T	V	L	Y	I	A	S	M	W	V	N	G	I	A	Q	G	L	M	W	R	A	I	N	D	D	G	T	L	T	Y	S	F	V	E	S	L	E	A	S	H	P	G	F	V	V	R	M	I	G	G	A	I	F	F	A	G	M	L	V	M	A	Y
Template Known Secondary structure		S		S		S																																			B		T	T	S	S	B	S	S									T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	Y	V	S	I	R	D	R	D	Q	N	R	D	L	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	T	W	R	T	V	Q	A	A	K	P	A	E	Y	D	A	A
Template Known Secondary structure									S		S	S
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470