Job Description P0ABI8 Confidence 100.00% Date Thu Jan 5 11:15:34 GMT 2012 Rank 6 Aligned Residues 501 % Identity 100% Template c1fftF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli Resolution 3.50 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	H	K	R	L	G	I	M	Y	I	I	V	A	I	V	M	L	L	R	G	F	A	D	A	I	M	M	R	S	Q	Q	A	L	A	S	A	G	E	A	G	F	L	P	P	H	H	Y	D	Q	I	F	T	A	H	G	V	I	M	I	F	F	V	A	M	P	F	V	I	G	L	M	N	L	V	V	P	L	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	H	K	R	L	G	I	M	Y	I	I	V	A	I	V	M	L	L	R	G	F	A	D	A	I	M	M	R	S	Q	Q	A	L	A	S	A	G	E	A	G	F	L	P	P	H	H	Y	D	Q	I	F	T	A	H	G	V	I	M	I	F	F	V	A	M	P	F	V	I	G	L	M	N	L	V	V	P	L	Q	I
Template Known Secondary structure																														T	T	T	T	T	S	S	S	S		T	T				S	T																	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	R	D	V	A	F	P	F	L	N	N	L	S	F	W	F	T	V	V	G	V	I	L	V	N	V	S	L	G	V	G	E	F	A	Q	T	G	W	L	A	Y	P	P	L	S	G	I	E	Y	S	P	G	V	G	V	D	Y	W	I	W	S	L	Q	L	S	G	I	G	T	T	L	T	G	I	N	F	F	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	R	D	V	A	F	P	F	L	N	N	L	S	F	W	F	T	V	V	G	V	I	L	V	N	V	S	L	G	V	G	E	F	A	Q	T	G	W	L	A	Y	P	P	L	S	G	I	E	Y	S	P	G	V	G	V	D	Y	W	I	W	S	L	Q	L	S	G	I	G	T	T	L	T	G	I	N	F	F	V	T
Template Known Secondary structure				S	S		S	S																							T	T	T					S	T	T	T	T		T	T	T	S	S		S		T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	K	M	R	A	P	G	M	T	M	F	K	M	P	V	F	T	W	A	S	L	C	A	N	V	L	I	I	A	S	F	P	I	L	T	V	T	V	A	L	L	T	L	D	R	Y	L	G	T	H	F	F	T	N	D	M	G	G	N	M	M	M	Y	I	N	L	I	W	A	W	G	H	P	E	V	Y	I	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	K	M	R	A	P	G	M	T	M	F	K	M	P	V	F	T	W	A	S	L	C	A	N	V	L	I	I	A	S	F	P	I	L	T	V	T	V	A	L	L	T	L	D	R	Y	L	G	T	H	F	F	T	N	D	M	G	G	N	M	M	M	Y	I	N	L	I	W	A	W	G	H	P	E	V	Y	I	L	I
Template Known Secondary structure						S		T	T			G	G	G																		T	T																				S	S		T	T	T	T																					T	T
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	V	F	G	V	F	S	E	I	A	A	T	F	S	R	K	R	L	F	G	Y	T	S	L	V	W	A	T	V	C	I	T	V	L	S	F	I	V	W	L	H	H	F	F	T	M	G	A	G	A	N	V	N	A	F	F	G	I	T	T	M	I	I	A	I	P	T	G	V	K	I	F	N	W	L	F	T	M	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	V	F	G	V	F	S	E	I	A	A	T	F	S	R	K	R	L	F	G	Y	T	S	L	V	W	A	T	V	C	I	T	V	L	S	F	I	V	W	L	H	H	F	F	T	M	G	A	G	A	N	V	N	A	F	F	G	I	T	T	M	I	I	A	I	P	T	G	V	K	I	F	N	W	L	F	T	M	Y
Template Known Secondary structure																	T	S			S	S														T	T	S	S		G	G	G	G	T	T	T	T	T																T	T													T	T	T
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	R	I	V	F	H	S	A	M	L	W	T	I	G	F	I	V	T	F	S	V	G	G	M	T	G	V	L	L	A	V	P	G	A	D	F	V	L	H	N	S	L	F	L	I	A	H	F	H	N	V	I	I	G	G	V	V	F	G	C	F	A	G	M	T	Y	W	W	P	K	A	F	G	F	K	L	N	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	R	I	V	F	H	S	A	M	L	W	T	I	G	F	I	V	T	F	S	V	G	G	M	T	G	V	L	L	A	V	P	G	A	D	F	V	L	H	N	S	L	F	L	I	A	H	F	H	N	V	I	I	G	G	V	V	F	G	C	F	A	G	M	T	Y	W	W	P	K	A	F	G	F	K	L	N	E	T
Template Known Secondary structure		T						S																								T	S						T	T	T	T	B													T	T	T												S					S	S
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	G	K	R	A	F	W	F	W	I	I	G	F	F	V	A	F	M	P	L	Y	A	L	G	F	M	G	M	T	R	R	L	S	Q	Q	I	D	P	Q	F	H	T	M	L	M	I	A	A	S	G	A	V	L	I	A	L	G	I	L	C	L	V	I	Q	M	Y	V	S	I	R	D	R	D	Q	N	R	D	L	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	G	K	R	A	F	W	F	W	I	I	G	F	F	V	A	F	M	P	L	Y	A	L	G	F	M	G	M	T	R	R	L	S	Q	Q	I	D	P	Q	F	H	T	M	L	M	I	A	A	S	G	A	V	L	I	A	L	G	I	L	C	L	V	I	Q	M	Y	V	S	I	R	D	R	D	Q	N	R	D	L	T	G
Template Known Secondary structure																											T	T		B	T	T		S					T	T																															S	S							S		S
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	W	G	G	R	T	L	E	W	A	T	S	S	P	P	P	F	Y	N	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	W	G	G	R	T	L	E	W	A	T	S	S	P	P	P	F	Y	N	F
Template Known Secondary structure		S		T	T				T	T	T	T	S		S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.