Job Description P0AEA8 Confidence 95.60% Date Wed Jan 25 15:20:31 GMT 2012 Rank 165 Aligned Residues 123 % Identity 15% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.												.	.	.	.	60	.	.				.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.								.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.								.	.	.
Query Sequence		M	D	H	L	P	I	F	C	Q	L	R	D	R	D	C	L	I	V	G	G	G	D	V	A	E	R	K	A	R	L	L	L	D	A	G	A	R	L	T	V	N	A	L	A	F	I	P	Q	F	T	A	W	A	D	A	.	.	.	.	.	.	.	.	.	.	.	G	M	L	T	L	V	E	.	.	.	G	P	F	D
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.								.	.	.
Alig confidence																																											.	.													.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Conservation																																											.	.
Template Sequence		I	T	H	L	P	L	C	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	.	.	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L
Template Known Secondary structure			T					T	T	S	S	S								S		S	S	S							T	T		T	T								.	.															T	T	T	G	G	G	T	T		T	T						S
Template Predicted Secondary structure																																											.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		67	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.											.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure							.												.	.	.	.	.	.	.	.	.	.
Query SS confidence							.												.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	L	L	D	.	T	C	W	L	A	I	A	A	T	D	D	.	.	.	.	.	.	.	.	.	.	D	A	L	N	Q	R	V	S	E	A	A	E	A	R	R	I	F	C	N	V	V	D	A	P	K	A	A	S	F	I	M	P	S	I	I	D	R	S	P	L	M	V	A	V	S	S	G	G	T	S	P	V	L
Query Conservation							.												.	.	.	.	.	.	.	.	.	.
Alig confidence							.												.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	A	A	E	G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T	Q	A	E	S	L	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	X	D	I
Template Known Secondary structure			S	S		S	S												S	S	S	G	G	G	G	G	G	S																								T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240																								.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	L	R	E	K	L	E	S	L	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	D	I	V	S	N	C	R	E	I	F	K
Template Known Secondary structure														S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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