Job Description P45562 Confidence 100.00% Date Thu Jan 5 12:03:15 GMT 2012 Rank 2 Aligned Residues 406 % Identity 12% Template d1pw4a_ SCOP info MFS general substrate transporter MFS general substrate transporter Glycerol-3-phosphate transporter Resolution 3.30

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.				.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		S	I	A	M	R	L	K	V	M	S	F	L	Q	Y	F	I	W	G	S	W	.	.	.	L	V	T	L	G	S	Y	M	I	N	T	L	H	F	T	G	A	N	V	G	M	V	Y	S	S	K	G	I	A	A	I	I	M	P	G	I	M	G	I	I	A	D	K	W	L	R	A	E	R	A	Y	M	L	C	H	L	V
Query Conservation																						.	.	.
Alig confidence																						.	.	.									.
Template Conservation																																	.
Template Sequence		R	L	R	W	Q	I	F	L	G	I	F	F	G	Y	A	A	Y	Y	L	V	R	K	N	F	A	L	A	M	P	Y	L	.	V	E	Q	G	F	S	R	G	D	L	G	F	A	L	S	G	I	S	I	A	Y	G	F	S	K	F	I	M	G	S	V	S	D	R	S	N	P	R	V	F	L	P	A	G	L	I	L	A
Template Known Secondary structure																							T	S								T	.	T	S	S	T	T		S	S																											S
Template Predicted Secondary structure																																	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		79	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		C	A	G	V	L	F	Y	.	.	.	A	A	S	V	T	D	P	D	M	M	F	W	V	M	L	V	N	A	M	A	F	M	P	T	I	A	L	S	N	S	V	S	Y	S	C	L	A	Q	A	G	L	D	P	V	T	A	F	P	P	I	R	V	F	G	T	V	G	F	I	V	A	M	W	A	V	S	L	L	H	L
Query Conservation									.	.	.
Alig confidence									.	.	.
Template Conservation
Template Sequence		A	A	V	M	L	F	M	G	F	V	P	W	A	T	S	S	I	A	V	M	F	V	L	L	F	L	C	G	W	F	Q	G	M	G	W	P	P	C	G	R	T	M	V	H	W	W	S	Q	K	E	R	G	G	I	V	S	V	W	N	C	A	H	N	V	G	G	G	I	P	P	L	L	F	L	L	G	M	A	W	F
Template Known Secondary structure																S	S	S	S																T										T	T		T	T	T																		T	S												T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	S	S	L	Q	L	Y	I	A	S	G	A	S	L	L	L	S	A	Y	A	L	T	L	P	K	I	P	V	A	E	K	K	A	T	T	S	L	A	S	K	L	G	L	D	A	F	V	L	F	K	N	P	R	M	A	I	F	F	L	F	A	M	M	L	G	A	V	L	Q	I	T	N	V	F	G	N	P	F	L
Query Conservation
Alig confidence																																																						.	.	.
Template Conservation																																																						.	.	.
Template Sequence		N	D	W	H	A	A	L	Y	M	P	A	F	C	A	I	L	V	A	L	F	A	F	A	M	M	R	D	T	P	Q	S	C	G	L	P	P	I	E	E	Y	K	N	D	T	A	K	Q	I	F	M	Q	Y	.	.	.	V	L	P	N	K	L	L	W	Y	I	A	I	A	N	V	F	V	Y	L	L	R	Y	G	I	L
Template Known Secondary structure				S	T	T		T																					S	S	T	T	T				S		T	T	T						T							.	.	.	T	S	S
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		H	D	F	A	R	N	P	E	F	A	D	S	F	V	V	K	Y	P	S	I	L	L	S	V	S	Q	M	A	E	V	G	F	I	L	T	I	P	F	F	L	K	R	F	G	I	K	T	.	V	M	L	M	S	M	V	A	W	T	L	R	F	G	F	F	A	Y	G	D	P	S	T	T	G	F	I	L	L	L	L	S
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		D	W	S	P	T	Y	L	K	E	V	K	H	F	A	L	D	K	S	S	W	A	Y	F	L	Y	E	Y	A	G	I	P	G	T	L	L	C	G	W	M	S	D	K	V	F	R	G	N	R	G	A	T	G	V	F	F	M	T	L	V	T	I	A	T	I	V	Y	W	M	N	P	A	G	N	P	T	V	D	M	I	C
Template Known Secondary structure								B	T	T	B	S																																T	S	T	T																				T	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	V	Y	G	C	A	F	D	F	F	N	I	S	G	S	V	F	V	E	Q	E	V	D	S	S	I	R	A	S	A	Q	G	L	F	M	T	M	V	N	G	V	G	A	W	V	G	S	I	L	S	G	M	A	V	D	Y	F	S	V	D	G	V	K	D	W	Q	T	I	W	L	V	F	A	G	Y	A	L	F	L
Query Conservation
Alig confidence																																																													.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.
Template Sequence		M	I	V	I	G	F	L	I	Y	G	P	V	M	L	I	G	L	H	A	L	E	L	A	P	K	K	A	A	G	T	A	A	G	F	T	G	L	F	G	Y	L	G	G	S	V	A	A	S	A	I	V	G	Y	T	V	D	F	F	G	.	.	.	.	.	.	W	D	G	G	F	M	V	M	I	G	G	S	I	L	A
Template Known Secondary structure										T													T	S		T	T																															S	S		.	.	.	.	.	.	S
Template Predicted Secondary structure																																																													.	.	.	.	.	.
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.							.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	I	F	F	F	G	F	K	Y	N	H	D	P	E	K	I	K	H	R	A	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	L	L	I	V	V	M	I	G	E	K	R	R	H	E	Q	L	L	Q	E	L	V
Template Known Secondary structure																		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions